Co-expression analysis

Gene ID Ptp.4252.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g08290: YLS8 (HF=1e-2)
Module size 7 genes
NF 0.28
%ile 50.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.83Ptp.4252.1.S1_atDN499823hypothetical protein-1e-2At5g08290YLS8O.I.H.G.S.X.
0.6791.10.87Ptp.3038.1.A1_atCV237450acyl:coa ligase acetate-coa synthetase-like protein-6e-4At1g68270AMP-dependent synthetase and ligase family proteinO.I.H.G.S.X.
0.5078.60.91Ptp.6751.1.A1_s_atCK090811hypothetical protein-6e-4At2g29710UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.3661.60.89PtpAffx.249.361.A1_atBU830482hypothetical protein-5e-3At4g24220VEP1 (VEIN PATTERNING 1)O.I.H.G.S.X.
0.3559.70.89Ptp.2209.1.S1_atBU893674cytochrome P450 /// cytochrome P450-2e-1At5g66815unknown proteinO.I.H.G.S.X.
0.1830.80.90PtpAffx.205060.1.S1_atpmrna10021hypothetical protein-3e-63At3g53450unknown proteinO.I.H.G.S.X.
0.0914.60.86Ptp.4879.1.S1_atBU810630hypothetical protein-3e-1At5g11920AtcwINV6 (6-&1-fructan exohydrolase)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.296.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.395.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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