Co-expression analysis

Gene ID Ptp.4187.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g07400: 17.8 kDa class I heat shock protein (HSP17.8-CI) (HF=2e-9)
Module size 18 genes
NF 0.52
%ile 83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.84Ptp.4187.1.S1_atCA930797hypothetical protein-2e-9At1g0740017.8 kDa class I heat shock protein (HSP17.8-CI)O.I.H.G.S.X.
0.8497.10.91Ptp.5317.1.S1_s_atBU832693hypothetical protein-2e-15At5g47390myb family transcription factorO.I.H.G.S.X.
0.7995.30.89PtpAffx.161291.1.S1_atCX170912hypothetical protein-6e-25At5g56630PFK7 (PHOSPHOFRUCTOKINASE 7)O.I.H.G.S.X.
0.6991.50.94PtpAffx.205187.1.S1_s_atpmrna10271hypothetical protein-5e-32At5g65140trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.6588.60.92PtpAffx.217953.1.S1_atpmrna33427hypothetical protein-1e-13At1g49230zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6388.10.92Ptp.4951.1.S1_s_atBU811643hypothetical protein-5e-11At1g51140basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6187.00.94PtpAffx.205187.1.S1_atpmrna10271hypothetical protein-5e-32At5g65140trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.6187.00.94PtpAffx.160721.1.S1_s_atAJ769720hypothetical protein-2e-5At5g10100trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.6187.00.95PtpAffx.206345.1.S1_atpmrna12596hypothetical protein-7e-10At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)O.I.H.G.S.X.
0.5784.20.94PtpAffx.4862.1.S1_a_atBP936752hypothetical protein-3e-18At5g44730haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.5582.20.92PtpAffx.126071.1.S1_atCX187314hypothetical protein-4e-1At5g01320pyruvate decarboxylase, putativeO.I.H.G.S.X.
0.4369.70.93PtpAffx.5862.1.A1_atCV231890chromatin remodeling complex subunit-1e+0At2g31380STHO.I.H.G.S.X.
0.4369.70.92PtpAffx.205848.1.S1_atpmrna11587hypothetical protein-2e-33At1g20270oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.3863.70.88PtpAffx.8996.1.S1_atCK091767hypothetical protein-2e+0At4g05010F-box family proteinO.I.H.G.S.X.
0.3863.70.93PtpAffx.17054.1.A1_atCV268637--2e-2At5g19151unknown proteinO.I.H.G.S.X.
0.3661.60.91PtpAffx.211786.1.S1_atpmrna23119hypothetical protein-3e+0At5g44578unknown proteinO.I.H.G.S.X.
0.3458.30.90PtpAffx.203551.1.S1_atpmrna7052chromatin remodeling complex subunit-4e-26At3g54460SNF2 domain-containing protein / helicase domain-containing protein / F-box family proteinO.I.H.G.S.X.
0.2645.20.92Ptp.3127.1.S1_s_atAJ777838hypothetical protein-3e-52At4g26270PFK3 (PHOSPHOFRUCTOKINASE 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.196.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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