Co-expression analysis

Gene ID Ptp.4080.1.A1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g60340: maoC-like dehydratase domain-containing protein (HF=9e-9)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.96Ptp.4080.1.A1_s_atCV239227hypothetical protein-9e-9At5g60340maoC-like dehydratase domain-containing proteinO.I.H.G.S.X.
0.6187.00.96Ptp.4262.1.S1_atCV230272hypothetical protein-1e-42At3g02320RNA binding / tRNA (guanine-N2-)-methyltransferaseO.I.H.G.S.X.
0.5784.20.96Ptp.2066.1.S1_s_atCK088764histone deacetylase complex protein-7e-15At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.3357.50.96Ptp.6459.1.S1_atCV263208--5e-13At2g42210mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.3357.50.97PtpAffx.2360.2.A1_atCV253361hypothetical protein-2e-21At4g39280phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeO.I.H.G.S.X.
0.3255.20.96PtpAffx.207450.1.S1_s_atpmrna14790hypothetical protein-2e-62At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.597.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.697.2GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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