Co-expression analysis

Gene ID	Ptp.4040.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g21000: ACA6 (ALPHA CARBONIC ANHYDRASE 6) (HF=2e+0)
Module size	7 genes
NF	0.40
%ile	68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.92	Ptp.4040.1.S1_s_at	BU861549	hypothetical protein	-	2e+0	At4g21000	ACA6 (ALPHA CARBONIC ANHYDRASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.93	PtpAffx.5188.1.S1_at	AY789051.1	hypothetical protein	-	6e-35	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.92	PtpAffx.211273.1.S1_at	pmrna22115	hypothetical protein	-	2e-77	At2g40690	GLY1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.92	PtpAffx.5188.1.S1_a_at	AY789051.1	hypothetical protein	-	6e-35	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.209390.1.S1_at	pmrna18598	hypothetical protein	-	9e-5	At3g52270	ATP binding / RNA polymerase II transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.17383.2.A1_s_at	CV283276	hypothetical protein	-	8e-12	At2g45740	PEX11D	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	Ptp.2093.1.S1_at	CV277161	hypothetical protein	-	2e-34	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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