Co-expression analysis

Gene ID	Ptp.4024.2.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g22890: APS1 (ATP SULFURYLASE 1) (HF=2e-75)
Module size	6 genes
NF	0.58
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.93	Ptp.4024.2.A1_at	CV275984	hypothetical protein	-	2e-75	At3g22890	APS1 (ATP SULFURYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.92	PtpAffx.2376.1.S1_at	CV241004	hypothetical protein	-	6e-11	At1g01300	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.90	PtpAffx.210362.1.S1_s_at	pmrna20368	hypothetical protein	-	4e-1	At4g27585	band 7 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.80539.1.A1_at	BP936249	hypothetical protein	-	2e-3	At1g20900	ESC (ESCAROLA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.93	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.92	PtpAffx.205458.1.S1_at	pmrna10789	hypothetical protein	-	1e-5	At1g33080	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage