Co-expression analysis

Gene ID	Ptp.3942.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g26480: KH domain-containing protein (HF=5e-6)
Module size	12 genes
NF	0.33
%ile	58.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.95	Ptp.3942.1.S1_a_at	BU863654	hypothetical protein	-	5e-6	At4g26480	KH domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.97	PtpAffx.78955.1.S1_at	BU876794	hypothetical protein	-	6e-55	At4g24550	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.213907.1.S1_s_at	pmrna27117	hypothetical protein	-	5e-54	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.96	PtpAffx.20133.1.S1_at	CK087705	hypothetical protein	-	1e-41	At2g27100	SE (SERRATE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.129212.1.S1_at	BP929522	hypothetical protein	-	1e+0	At5g11412	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.111718.1.S1_at	CF230834	-	-	1e-7	At5g02770	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	Ptp.5762.1.S1_at	AJ777748	ebs-bah-phd domain-containing protein	-	2e-46	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.131043.1.S1_s_at	CK107620	hypothetical protein	-	5e-6	At1g65280	heat shock protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.97	PtpAffx.134857.2.S1_at	CN523812	hypothetical protein	-	2e-24	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.98	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.97	Ptp.6294.1.S1_a_at	CF118987	hypothetical protein	-	1e-41	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.96	PtpAffx.131029.1.S1_s_at	BU825468	hypothetical protein	-	2e-20	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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