Co-expression analysis

Gene ID Ptp.3802.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g45910: protein kinase family protein / U-box domain-containing protein (HF=4e-13)
Module size 16 genes
NF 0.28
%ile 49.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.94Ptp.3802.1.A1_atCV260698hypothetical protein-4e-13At2g45910protein kinase family protein / U-box domain-containing proteinO.I.H.G.S.X.
0.4673.70.95PtpAffx.127481.1.A1_atCV268338hypothetical protein-3e-2At5g18540unknown proteinO.I.H.G.S.X.
0.3762.30.96Ptp.2072.1.S1_atCV227202hypothetical protein-2e-78At3g46060ATRAB8AO.I.H.G.S.X.
0.3153.70.95Ptp.1995.1.S1_s_atCV233784hypothetical protein-5e-7At2g41430ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)O.I.H.G.S.X.
0.3052.00.95PtpAffx.84271.1.S1_atCK092971hypothetical protein-5e+0At1g32760glutaredoxin family proteinO.I.H.G.S.X.
0.2950.50.95PtpAffx.7686.6.A1_a_atCV283756thioredoxin h-7e-6At3g08710ATH9 (thioredoxin H-type 9)O.I.H.G.S.X.
0.2950.50.96PtpAffx.103879.1.S1_atDN492878hypothetical protein-6e+0At5g56170-O.I.H.G.S.X.
0.2747.10.95PtpAffx.95703.1.A1_atCV239934hypothetical protein-4e-16At4g34660SH3 domain-containing protein 2 (SH3P2)O.I.H.G.S.X.
0.2645.20.95PtpAffx.44512.1.S1_a_atCV261744hypothetical protein-7e-26At5g16880VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.2543.60.96Ptp.1850.1.A1_atCK093508--1e+0At3g08505zinc finger (CCCH-type/C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2340.50.96PtpAffx.7225.1.S1_s_atCF234583hypothetical protein-1e-51At1g22620ATSAC1 (suppressor of actin 1)O.I.H.G.S.X.
0.2034.60.96PtpAffx.60149.1.S1_atBU831925hypothetical protein-7e-4At3g56190ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)O.I.H.G.S.X.
0.1932.70.96PtpAffx.34991.1.A1_atCV261322hypothetical protein-6e-50At4g26610D6PKL1 (D6 PROTEIN KINASE LIKE 1)O.I.H.G.S.X.
0.1932.70.96PtpAffx.12284.1.A1_s_atCV236490hypothetical protein-6e-81At3g46060ATRAB8AO.I.H.G.S.X.
0.1729.10.97PtpAffx.203185.1.S1_s_atpmrna6316hypothetical protein-2e-51At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.1626.90.96PtpAffx.100467.1.S1_atCX657915hypothetical protein-8e-40At4g16144-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.597.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.289.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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