Co-expression analysis

Gene ID Ptp.3744.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g16720: ATL2 (HF=1e-9)
Module size 6 genes
NF 0.58
%ile 88.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.93Ptp.3744.1.S1_s_atBU892630hypothetical protein-1e-9At3g16720ATL2O.I.H.G.S.X.
0.8096.00.93PtpAffx.136381.2.S1_s_atCN518102hypothetical protein-1e-3At3g61460BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2)O.I.H.G.S.X.
0.6187.00.94Ptp.3747.1.S1_s_atDN488219AP2/ERF domain-containing transcription factor-2e-1At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.5582.20.94PtpAffx.79516.1.S1_atAY780430.1--7e-16At3g16720ATL2O.I.H.G.S.X.
0.5380.50.93Ptp.6284.1.S1_atBU815355hypothetical protein-2e-13At5g58620zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.4268.60.93Ptp.3082.1.S1_s_atCF232410hypothetical protein-6e-1At3g5954060S ribosomal protein L38 (RPL38B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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