Co-expression analysis

Gene ID	Ptp.3670.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g08300: nodulin MtN21 family protein (HF=5e-11)
Module size	16 genes
NF	0.69
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	0.88	Ptp.3670.1.S1_at	CV273865	hypothetical protein	-	5e-11	At4g08300	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.84	97.1	0.89	PtpAffx.12427.2.S1_at	CV227991	-	-	1e-19	At4g04210	PUX4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.88	PtpAffx.127059.1.A1_at	CV258719	hypothetical protein	-	1e-4	At1g66270	BGLU21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.79	95.3	0.89	PtpAffx.212416.1.S1_at	pmrna24321	hypothetical protein	-	5e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.79	95.3	0.91	PtpAffx.162331.2.S1_at	AJ780051	-	-	1e+0	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.86	PtpAffx.56188.1.A1_at	CV274756	hypothetical protein	-	5e+0	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.89	PtpAffx.51939.1.S1_at	CV271961	glutaredoxin	-	2e-3	At3g62930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.90	PtpAffx.218983.1.S1_at	pmrna34757	hypothetical protein	-	3e-4	At5g12260	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.91	PtpAffx.158291.1.A1_at	BP931571	-	-	3e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.85	PtpAffx.200185.1.S1_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.225487.1.S1_at	pmrna44866	hypothetical protein	-	7e-1	At2g38360	PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.90	PtpAffx.200185.1.S1_s_at	pmrna342	hypothetical protein	-	8e-4	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.91	Ptp.3048.1.S1_at	CV274194	-	-	2e-80	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.91	PtpAffx.63615.1.S1_at	DN491597	hypothetical protein	-	2e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.90	PtpAffx.212416.1.S1_x_at	pmrna24321	hypothetical protein	-	5e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.89	PtpAffx.217867.1.S1_at	pmrna33301	hypothetical protein	-	4e-3	At1g78780	pathogenesis-related family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.1	99.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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