CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.3643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g53620: unknown protein (HF=7e-3)

Module size 6 genes

NF 0.64

%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.98 Ptp.3643.1.S1_at BU836758 hypothetical protein - 7e-3 At1g53620 unknown protein O.I. H.G. S.X.
0.71 92.6 0.98 Ptp.7259.1.A1_at DN487946 hypothetical protein - 1e-13 At1g07710 ankyrin repeat family protein O.I. H.G. S.X.
0.67 91.1 0.98 Ptp.674.1.A1_at CK087369 hypothetical protein - 2e-11 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative O.I. H.G. S.X.
0.53 80.5 0.98 Ptp.100.1.S1_a_at BU834161 - - 4e-5 At2g41790 peptidase M16 family protein / insulinase family protein O.I. H.G. S.X.
0.50 78.6 0.98 Ptp.1815.1.S1_at CV263204 hypothetical protein - 7e-139 At5g20000 26S proteasome AAA-ATPase subunit, putative O.I. H.G. S.X.
0.44 71.9 0.98 Ptp.3383.1.S1_at DN488137 hypothetical protein - 2e-25 At2g21270 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 95.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.755.1.A1_s_at, orthologous to the query gene, Ptp.3643.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 Zm.755.1.A1_s_at At1g53620 hypothetical protein LOC100280294 - 4e+0 At5g62200 embryo-specific protein-related O.I. H.G. S.X.
0.31 31.6 Zm.13273.2.A1_x_at At1g53620 - - 3e+0 At4g10130 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.13 6.8 Zm.11687.1.S1_at At1g53620 eukaryotic translation initiation factor 4E-1 - 2e-6 At4g18040 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) O.I. H.G. S.X.
0.08 3.4 Zm.11927.1.A1_at At1g53620 - - 1e+0 At4g31360 selenium binding O.I. H.G. S.X.
0.07 2.9 Zm.9813.1.A1_at At1g53620 serine esterase family protein - 2e+0 At5g51180 unknown protein O.I. H.G. S.X.
0.05 1.9 Zm.5565.1.S2_at At1g53620 hypothetical protein LOC100194102 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) O.I. H.G. S.X.
0.02 0.7 Zm.5155.1.S1_at At1g53620 hypothetical protein LOC100193357 - 7e-20 At5g27740 EMB2775 (EMBRYO DEFECTIVE 2775) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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