Co-expression analysis

Gene ID	Ptp.3643.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g53620: unknown protein (HF=7e-3)
Module size	6 genes
NF	0.64
%ile	93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	Ptp.3643.1.S1_at	BU836758	hypothetical protein	-	7e-3	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.98	Ptp.7259.1.A1_at	DN487946	hypothetical protein	-	1e-13	At1g07710	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.98	Ptp.674.1.A1_at	CK087369	hypothetical protein	-	2e-11	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.98	Ptp.100.1.S1_a_at	BU834161	-	-	4e-5	At2g41790	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.1815.1.S1_at	CV263204	hypothetical protein	-	7e-139	At5g20000	26S proteasome AAA-ATPase subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.98	Ptp.3383.1.S1_at	DN488137	hypothetical protein	-	2e-25	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1614403_s_at, orthologous to the query gene, Ptp.3643.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	88.6	1614403_s_at	At1g53620	hypothetical protein LOC100250515	-	2e+0	At4g11430	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1610193_at	At1g53620	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.65	85.0	1610092_at	At1g53620	hypothetical protein LOC100250286	-	2e-18	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.60	81.9	1610095_s_at	At1g53620	hypothetical protein LOC100257471	-	9e-49	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1609713_at	At1g53620	similar to ribosomal protein L10a	-	4e-51	At2g27530	PGY1 (PIGGYBACK1)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1616883_at	At1g53620	hypothetical protein LOC100260533	-	2e-158	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1608096_at	At1g53620	hypothetical protein LOC100264515	-	6e-59	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1608953_at	At1g53620	hypothetical protein LOC100249027	-	5e-19	At1g18080	ATARCA	O.I.	H.G.	S.X.	Please select
0.51	73.2	1613860_s_at	At1g53620	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.	Please select
0.51	73.2	1607915_at	At1g53620	hypothetical protein LOC100246504	-	4e-50	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1609733_at	At1g53620	hypothetical protein LOC100250067	-	5e-94	At2g40010	60S acidic ribosomal protein P0 (RPP0A)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1610139_s_at	At1g53620	hypothetical protein LOC100253227	-	2e-24	At4g10450	60S ribosomal protein L9 (RPL90D)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1615194_at	At1g53620	hypothetical protein LOC100256025	-	3e-29	At1g77940	60S ribosomal protein L30 (RPL30B)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1610195_at	At1g53620	hypothetical protein LOC100255682	-	2e-21	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	1606693_at	At1g53620	hypothetical protein LOC100265371	-	3e-43	At5g05670	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.43	61.5	1620213_at	At1g53620	hypothetical protein LOC100252268	-	5e-1	At1g13600	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1611082_s_at	At1g53620	hypothetical protein LOC100262228	-	3e-42	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1612493_at	At1g53620	hypothetical protein LOC100250837	-	3e-3	At5g57870	eukaryotic translation initiation factor 4F, putative / eIF-4F, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615105_s_at	At1g53620	hypothetical protein LOC100256979	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.39	54.9	1621149_at	At1g53620	similar to 60S ribosomal protein L19	-	3e-79	At1g02780	emb2386 (embryo defective 2386)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1612169_at	At1g53620	hypothetical protein LOC100243098	-	2e-16	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	1610560_at	At1g53620	hypothetical protein LOC100258347	-	7e-52	At3g47370	40S ribosomal protein S20 (RPS20B)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1608572_at	At1g53620	hypothetical protein LOC100244162	-	7e-20	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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