CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.3643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g53620: unknown protein (HF=7e-3)

Module size 6 genes

NF 0.64

%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.98 Ptp.3643.1.S1_at BU836758 hypothetical protein - 7e-3 At1g53620 unknown protein O.I. H.G. S.X.
0.71 92.6 0.98 Ptp.7259.1.A1_at DN487946 hypothetical protein - 1e-13 At1g07710 ankyrin repeat family protein O.I. H.G. S.X.
0.67 91.1 0.98 Ptp.674.1.A1_at CK087369 hypothetical protein - 2e-11 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative O.I. H.G. S.X.
0.53 80.5 0.98 Ptp.100.1.S1_a_at BU834161 - - 4e-5 At2g41790 peptidase M16 family protein / insulinase family protein O.I. H.G. S.X.
0.50 78.6 0.98 Ptp.1815.1.S1_at CV263204 hypothetical protein - 7e-139 At5g20000 26S proteasome AAA-ATPase subunit, putative O.I. H.G. S.X.
0.44 71.9 0.98 Ptp.3383.1.S1_at DN488137 hypothetical protein - 2e-25 At2g21270 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.98	Ptp.3643.1.S1_at	BU836758	hypothetical protein	-	7e-3	At1g53620	unknown protein	O.I.	H.G.	S.X.
0.71	92.6	0.98	Ptp.7259.1.A1_at	DN487946	hypothetical protein	-	1e-13	At1g07710	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.67	91.1	0.98	Ptp.674.1.A1_at	CK087369	hypothetical protein	-	2e-11	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.
0.53	80.5	0.98	Ptp.100.1.S1_a_at	BU834161	-	-	4e-5	At2g41790	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.
0.50	78.6	0.98	Ptp.1815.1.S1_at	CV263204	hypothetical protein	-	7e-139	At5g20000	26S proteasome AAA-ATPase subunit, putative	O.I.	H.G.	S.X.
0.44	71.9	0.98	Ptp.3383.1.S1_at	DN488137	hypothetical protein	-	2e-25	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 95.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.3	95.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os08g0122400, orthologous to the query gene, Ptp.3643.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os08g0122400 At1g53620 - Conserved hypothetical protein 1e+0 At5g04853 unknown protein O.I. H.G. S.X.
0.93 99.2 Os03g0830800 At1g53620 - Plant invertase/pectin methylesterase inhibitordomain containing protein 2e+0 At1g03600 photosystem II family protein O.I. H.G. S.X.
0.92 99.1 Os04g0191000 At1g53620 - Retrotransposon gag protein family protein 6e-1 At1g08770 PRA1.E (PRENYLATED RAB ACCEPTOR 1.E) O.I. H.G. S.X.
0.92 99.1 Os04g0317500 At1g53620 - - 1e+0 At2g20750 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) O.I. H.G. S.X.
0.91 98.9 Os10g0414800 At1g53620 - Protein of unknown function DUF593 family protein 2e-9 At1g70750 unknown protein O.I. H.G. S.X.
0.90 97.1 Os03g0337100 At1g53620 - Hypothetical protein 2e+1 At5g41992 CPuORF58 (Conserved peptide upstream open reading frame 58) O.I. H.G. S.X.
0.90 97.1 Os01g0306200 At1g53620 - Conserved hypothetical protein 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.89 96.9 Os04g0500300 At1g53620 - Conserved hypothetical protein 1e+0 At3g12340 FK506 binding / peptidyl-prolyl cis-trans isomerase O.I. H.G. S.X.
0.87 96.6 Os10g0406100 At1g53620 - - 3e-33 At1g01050 AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1) O.I. H.G. S.X.
0.85 96.1 Os07g0274400 At1g53620 - B12D family protein 5e+0 At3g48140 senescence-associated protein, putative O.I. H.G. S.X.
0.85 96.1 Os03g0830600 At1g53620 - Pectinesterase inhibitor domain containing protein 5e-1 At1g05350 thiF family protein O.I. H.G. S.X.
0.84 96.0 Os02g0116300 At1g53620 - Oligopeptide transporter OPT superfamily protein 2e-2 At1g65730 YSL7 (YELLOW STRIPE LIKE 7) O.I. H.G. S.X.
0.83 95.8 Os12g0542000 At1g53620 - RALF 2e+0 At2g41430 ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) O.I. H.G. S.X.
0.83 95.8 Os05g0203000 At1g53620 - Conserved hypothetical protein 9e-2 At3g46900 COPT2 O.I. H.G. S.X.
0.83 95.8 Os02g0188600 At1g53620 - Conserved hypothetical protein 2e-1 At5g23680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.82 95.0 Os12g0641000 At1g53620 - Actin 66 (Fragment) 2e-24 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.81 94.8 Os07g0272300 At1g53620 - Hypothetical protein 9e-2 At2g44060 late embryogenesis abundant family protein / LEA family protein O.I. H.G. S.X.
0.80 94.6 Os07g0446000 At1g53620 - PAK-box/P21-Rho-binding domain containing protein 3e+0 At4g35025 unknown protein O.I. H.G. S.X.
0.78 93.4 Os06g0124400 At1g53620 - Hypothetical protein 1e+0 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) O.I. H.G. S.X.
0.77 93.1 Os06g0548800 At1g53620 - Nectarin 5 (Fragment) 2e-2 At1g26410 FAD-binding domain-containing protein O.I. H.G. S.X.
0.76 92.2 Os07g0247000 At1g53620 - Plant invertase/pectin methylesterase inhibitordomain containing protein 8e-1 At4g31830 unknown protein O.I. H.G. S.X.
0.73 91.1 Os04g0413100 At1g53620 - Conserved hypothetical protein 1e+0 At4g05070 unknown protein O.I. H.G. S.X.
0.72 89.8 Os02g0461000 At1g53620 - Conserved hypothetical protein 2e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.69 87.9 Os01g0517500 At1g53620 - Polygalacturonase (Fragment) 3e+0 At3g30845 unknown protein O.I. H.G. S.X.
0.68 87.5 Os12g0563700 At1g53620 - Pectinesterase family protein 9e-1 At5g53895 unknown protein O.I. H.G. S.X.
0.68 87.5 Os01g0369500 At1g53620 - C2 domain containing protein 2e+0 At1g18080 ATARCA O.I. H.G. S.X.
0.68 87.5 Os07g0238500 At1g53620 - Conserved hypothetical protein 1e+0 At4g13500 unknown protein O.I. H.G. S.X.
0.66 83.9 Os01g0201400 At1g53620 - Rapid ALkalinization Factor family protein 1e-1 At1g27390 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) O.I. H.G. S.X.
0.66 83.9 Os06g0545400 At1g53620 - Polygalacturonase (Fragment) 2e-4 At2g43860 polygalacturonase, putative / pectinase, putative O.I. H.G. S.X.
0.65 83.8 Os02g0580000 At1g53620 - Uncharacterized Cys-rich domain containing protein 3e-2 At3g18450 unknown protein O.I. H.G. S.X.
0.64 83.4 Os10g0471000 At1g53620 - Protein of unknown function DUF810 family protein 2e+0 At5g24550 BGLU32 (BETA GLUCOSIDASE 32) O.I. H.G. S.X.
0.64 83.4 Os05g0596000 At1g53620 - Peptidase aspartic family protein 6e-2 At5g40981 unknown protein O.I. H.G. S.X.
0.62 81.5 Os02g0741200 At1g53620 - Plant peroxidase family protein 1e-12 At5g47000 peroxidase, putative O.I. H.G. S.X.
0.60 79.7 Os01g0233800 At1g53620 - Protein kinase PVPK-1 (EC 2.7.1.-) 1e-18 At3g12690 AGC1.5 (AGC KINASE 1.5) O.I. H.G. S.X.
0.59 78.0 Os01g0235500 At1g53620 - Conserved hypothetical protein 6e+0 At5g64650 ribosomal protein L17 family protein O.I. H.G. S.X.
0.54 71.9 Os02g0797300 At1g53620 - Plasma membrane H+-ATPase (Fragment) 5e-13 At3g42640 AHA8 (Arabidopsis H(+)-ATPase 8) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	Os08g0122400	At1g53620	-	Conserved hypothetical protein	1e+0	At5g04853	unknown protein	O.I.	H.G.	S.X.
0.93	99.2	Os03g0830800	At1g53620	-	Plant invertase/pectin methylesterase inhibitordomain containing protein	2e+0	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.
0.92	99.1	Os04g0191000	At1g53620	-	Retrotransposon gag protein family protein	6e-1	At1g08770	PRA1.E (PRENYLATED RAB ACCEPTOR 1.E)	O.I.	H.G.	S.X.
0.92	99.1	Os04g0317500	At1g53620	-	-	1e+0	At2g20750	ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)	O.I.	H.G.	S.X.
0.91	98.9	Os10g0414800	At1g53620	-	Protein of unknown function DUF593 family protein	2e-9	At1g70750	unknown protein	O.I.	H.G.	S.X.
0.90	97.1	Os03g0337100	At1g53620	-	Hypothetical protein	2e+1	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	O.I.	H.G.	S.X.
0.90	97.1	Os01g0306200	At1g53620	-	Conserved hypothetical protein	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.
0.89	96.9	Os04g0500300	At1g53620	-	Conserved hypothetical protein	1e+0	At3g12340	FK506 binding / peptidyl-prolyl cis-trans isomerase	O.I.	H.G.	S.X.
0.87	96.6	Os10g0406100	At1g53620	-	-	3e-33	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	O.I.	H.G.	S.X.
0.85	96.1	Os07g0274400	At1g53620	-	B12D family protein	5e+0	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.
0.85	96.1	Os03g0830600	At1g53620	-	Pectinesterase inhibitor domain containing protein	5e-1	At1g05350	thiF family protein	O.I.	H.G.	S.X.
0.84	96.0	Os02g0116300	At1g53620	-	Oligopeptide transporter OPT superfamily protein	2e-2	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	O.I.	H.G.	S.X.
0.83	95.8	Os12g0542000	At1g53620	-	RALF	2e+0	At2g41430	ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)	O.I.	H.G.	S.X.
0.83	95.8	Os05g0203000	At1g53620	-	Conserved hypothetical protein	9e-2	At3g46900	COPT2	O.I.	H.G.	S.X.
0.83	95.8	Os02g0188600	At1g53620	-	Conserved hypothetical protein	2e-1	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.82	95.0	Os12g0641000	At1g53620	-	Actin 66 (Fragment)	2e-24	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.
0.81	94.8	Os07g0272300	At1g53620	-	Hypothetical protein	9e-2	At2g44060	late embryogenesis abundant family protein / LEA family protein	O.I.	H.G.	S.X.
0.80	94.6	Os07g0446000	At1g53620	-	PAK-box/P21-Rho-binding domain containing protein	3e+0	At4g35025	unknown protein	O.I.	H.G.	S.X.
0.78	93.4	Os06g0124400	At1g53620	-	Hypothetical protein	1e+0	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	O.I.	H.G.	S.X.
0.77	93.1	Os06g0548800	At1g53620	-	Nectarin 5 (Fragment)	2e-2	At1g26410	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.76	92.2	Os07g0247000	At1g53620	-	Plant invertase/pectin methylesterase inhibitordomain containing protein	8e-1	At4g31830	unknown protein	O.I.	H.G.	S.X.
0.73	91.1	Os04g0413100	At1g53620	-	Conserved hypothetical protein	1e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.
0.72	89.8	Os02g0461000	At1g53620	-	Conserved hypothetical protein	2e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.69	87.9	Os01g0517500	At1g53620	-	Polygalacturonase (Fragment)	3e+0	At3g30845	unknown protein	O.I.	H.G.	S.X.
0.68	87.5	Os12g0563700	At1g53620	-	Pectinesterase family protein	9e-1	At5g53895	unknown protein	O.I.	H.G.	S.X.
0.68	87.5	Os01g0369500	At1g53620	-	C2 domain containing protein	2e+0	At1g18080	ATARCA	O.I.	H.G.	S.X.
0.68	87.5	Os07g0238500	At1g53620	-	Conserved hypothetical protein	1e+0	At4g13500	unknown protein	O.I.	H.G.	S.X.
0.66	83.9	Os01g0201400	At1g53620	-	Rapid ALkalinization Factor family protein	1e-1	At1g27390	TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)	O.I.	H.G.	S.X.
0.66	83.9	Os06g0545400	At1g53620	-	Polygalacturonase (Fragment)	2e-4	At2g43860	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.
0.65	83.8	Os02g0580000	At1g53620	-	Uncharacterized Cys-rich domain containing protein	3e-2	At3g18450	unknown protein	O.I.	H.G.	S.X.
0.64	83.4	Os10g0471000	At1g53620	-	Protein of unknown function DUF810 family protein	2e+0	At5g24550	BGLU32 (BETA GLUCOSIDASE 32)	O.I.	H.G.	S.X.
0.64	83.4	Os05g0596000	At1g53620	-	Peptidase aspartic family protein	6e-2	At5g40981	unknown protein	O.I.	H.G.	S.X.
0.62	81.5	Os02g0741200	At1g53620	-	Plant peroxidase family protein	1e-12	At5g47000	peroxidase, putative	O.I.	H.G.	S.X.
0.60	79.7	Os01g0233800	At1g53620	-	Protein kinase PVPK-1 (EC 2.7.1.-)	1e-18	At3g12690	AGC1.5 (AGC KINASE 1.5)	O.I.	H.G.	S.X.
0.59	78.0	Os01g0235500	At1g53620	-	Conserved hypothetical protein	6e+0	At5g64650	ribosomal protein L17 family protein	O.I.	H.G.	S.X.
0.54	71.9	Os02g0797300	At1g53620	-	Plasma membrane H+-ATPase (Fragment)	5e-13	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Ptp.3643.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g53620: unknown protein (HF=7e-3)
Module size	6 genes
NF	0.64
%ile	93.2

Co-expression analysis

Gene ID Ptp.3643.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At1g53620: unknown protein (HF=7e-3) Module size 6 genes NF 0.64 %ile 93.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.3643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g53620: unknown protein (HF=7e-3)

Module size 6 genes

NF 0.64

%ile 93.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays