Co-expression analysis

Gene ID	Ptp.3643.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g53620: unknown protein (HF=7e-3)
Module size	6 genes
NF	0.64
%ile	93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	Ptp.3643.1.S1_at	BU836758	hypothetical protein	-	7e-3	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.98	Ptp.7259.1.A1_at	DN487946	hypothetical protein	-	1e-13	At1g07710	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.98	Ptp.674.1.A1_at	CK087369	hypothetical protein	-	2e-11	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.98	Ptp.100.1.S1_a_at	BU834161	-	-	4e-5	At2g41790	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.1815.1.S1_at	CV263204	hypothetical protein	-	7e-139	At5g20000	26S proteasome AAA-ATPase subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.98	Ptp.3383.1.S1_at	DN488137	hypothetical protein	-	2e-25	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.12751.1.S1_at, orthologous to the query gene, Ptp.3643.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	HgAffx.12751.1.S1_at	At1g53620	-	-	3e+0	At2g26520	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.14280.1.S1_at	At1g53620	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	PsAffx.C3000160_s_at	At1g53620	-	-	4e+0	At5g42860	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	HgAffx.17965.1.S1_at	At1g53620	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.437.1.S1_s_at	At1g53620	Profilin, PRO2	-	1e-10	At2g19760	PRF1 (PROFILIN 1)	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.10943.2.S1_at	At1g53620	-	-	9e-1	At5g42890	SCP2 (STEROL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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