CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.3643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g53620: unknown protein (HF=7e-3)

Module size 6 genes

NF 0.64

%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.98 Ptp.3643.1.S1_at BU836758 hypothetical protein - 7e-3 At1g53620 unknown protein O.I. H.G. S.X.
0.71 92.6 0.98 Ptp.7259.1.A1_at DN487946 hypothetical protein - 1e-13 At1g07710 ankyrin repeat family protein O.I. H.G. S.X.
0.67 91.1 0.98 Ptp.674.1.A1_at CK087369 hypothetical protein - 2e-11 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative O.I. H.G. S.X.
0.53 80.5 0.98 Ptp.100.1.S1_a_at BU834161 - - 4e-5 At2g41790 peptidase M16 family protein / insulinase family protein O.I. H.G. S.X.
0.50 78.6 0.98 Ptp.1815.1.S1_at CV263204 hypothetical protein - 7e-139 At5g20000 26S proteasome AAA-ATPase subunit, putative O.I. H.G. S.X.
0.44 71.9 0.98 Ptp.3383.1.S1_at DN488137 hypothetical protein - 2e-25 At2g21270 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.98	Ptp.3643.1.S1_at	BU836758	hypothetical protein	-	7e-3	At1g53620	unknown protein	O.I.	H.G.	S.X.
0.71	92.6	0.98	Ptp.7259.1.A1_at	DN487946	hypothetical protein	-	1e-13	At1g07710	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.67	91.1	0.98	Ptp.674.1.A1_at	CK087369	hypothetical protein	-	2e-11	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.
0.53	80.5	0.98	Ptp.100.1.S1_a_at	BU834161	-	-	4e-5	At2g41790	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.
0.50	78.6	0.98	Ptp.1815.1.S1_at	CV263204	hypothetical protein	-	7e-139	At5g20000	26S proteasome AAA-ATPase subunit, putative	O.I.	H.G.	S.X.
0.44	71.9	0.98	Ptp.3383.1.S1_at	DN488137	hypothetical protein	-	2e-25	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 95.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.3	95.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g53620, orthologous to the query gene, Ptp.3643.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.89 94.6 At1g53620 841797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV O.I. H.G. S.X.
0.57 73.8 At1g65130 842820 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POMFB O.I. H.G. S.X.
0.56 73.0 At5g51360 835210 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.53 68.6 At1g57570 842133 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 At3g53820 824549 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion, intracellular;PMO O.I. H.G. S.X.
0.50 65.3 At1g33870 840284 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative F:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOB O.I. H.G. S.X.
0.46 59.8 At3g58300 824999 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.46 59.8 At2g36820 - - - O.I. H.G. S.X.
0.45 58.3 At2g23440 816876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.45 58.3 At5g04650 830342 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.44 57.2 At4g21780 828266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.44 57.2 At3g44440 823569 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.44 57.2 At5g35870 833573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.43 55.3 At1g53940 841833 GLIP2 Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance O.I. H.G. S.X.
0.43 55.3 At1g26350 839177 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.42 53.9 At5g16160 831474 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.42 53.9 At3g50150 824177 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.40 50.8 At2g18070 816319 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 At5g17720 831639 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFVA O.I. H.G. S.X.
0.38 46.7 At1g59725 842265 DNAJ heat shock protein, putative F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV O.I. H.G. S.X.
0.37 45.0 At4g13480 826980 AtMYB79 (myb domain protein 79) Member of the R2R3 factor gene family. O.I. H.G. S.X.
0.36 43.6 At2g35080 818074 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding F:aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;P O.I. H.G. S.X.
0.36 43.6 At3g04270 819582 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.36 43.6 At2g05890 815141 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.36 43.6 At5g17200 831584 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA O.I. H.G. S.X.
0.35 41.6 At2g02380 814769 ATGSTZ2 Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). O.I. H.G. S.X.
0.35 41.6 At1g50190 3767425 - F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown O.I. H.G. S.X.
0.35 41.6 At2g02440 814774 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.33 38.1 At3g32050 822960 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.32 35.7 At1g51900 841617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPVA O.I. H.G. S.X.
0.31 33.8 At5g28170 832893 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.31 33.8 At4g21370 827889 S-locus protein kinase, putative The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1. O.I. H.G. S.X.
0.29 30.3 At2g29100 817458 ATGLR2.9 member of Putative ligand-gated ion channel subunit family O.I. H.G. S.X.
0.29 30.3 At4g36510 829803 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.28 30.3 At3g58390 825008 eukaryotic release factor 1 family protein / eRF1 family protein F:translation release factor activity;P:translational termination, translation;C:nucleus;OAMFPV O.I. H.G. S.X.
0.27 26.2 At1g33880 840285 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:N-terminal protein myristoylation, response to bacterium;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.27 26.2 At1g67635 843087 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.26 24.4 At4g20290 827776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM O.I. H.G. S.X.
0.26 24.4 At1g11970 837749 - F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPFOV O.I. H.G. S.X.
0.26 24.4 At2g02650 814794 reverse transcriptase-related F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.25 22.6 At1g69820 843318 GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3) F:gamma-glutamyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. H.G. S.X.
0.25 22.6 At5g58890 836006 AGL82 (AGAMOUS-LIKE 82) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. H.G. S.X.
0.25 22.6 At1g54230 841864 DNA binding F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;PF O.I. H.G. S.X.
0.25 22.6 At2g27375 817281 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.25 22.6 At5g37910 833770 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF O.I. H.G. S.X.
0.25 22.6 At2g19960 816515 hAT dimerisation domain-containing protein / transposase-related F:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.24 20.7 At3g26390 822243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.23 19.3 At1g15840 838154 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA O.I. H.G. S.X.
0.23 19.3 At5g07780 830671 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVA O.I. H.G. S.X.
0.22 17.5 At2g30120 817564 unknown protein F:unknown;P:unknown;C:unknown;POMBAF O.I. H.G. S.X.
0.22 17.5 At4g01110 827897 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.21 15.8 At3g13840 820596 scarecrow transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PB O.I. H.G. S.X.
0.21 15.8 At3g47910 823946 ubiquitin thiolesterase/ zinc ion binding F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFPBAV O.I. H.G. S.X.
0.19 12.7 At5g56830 3771525 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.19 12.7 At1g53600 841795 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA O.I. H.G. S.X.
0.19 12.7 At5g49750 835038 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV O.I. H.G. S.X.
0.18 11.4 At2g04300 814968 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.18 11.4 At4g23970 828497 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.18 11.4 At5g15060 831358 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.17 10.2 At3g53590 824527 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. H.G. S.X.
0.17 10.2 At3g45110 823647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.17 10.2 At2g05180 815066 CYP705A6 member of CYP705A O.I. H.G. S.X.
0.17 10.2 At2g23040 816834 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.16 8.8 At2g20660 816594 RALFL14 (ralf-like 14) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. H.G. S.X.
0.16 8.8 At4g22650 828361 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.16 8.8 At2g26420 817182 PIP5K3 (1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3) Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth. O.I. H.G. S.X.
0.16 8.8 At3g58230 824992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.16 8.8 At5g65500 836676 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ ubiquitin-protein ligase F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;PMOBFVA O.I. H.G. S.X.
0.15 7.8 At4g31960 829326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.12 4.9 At2g43730 818975 lectin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.12 4.9 At2g31020 817653 ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPBV O.I. H.G. S.X.
0.09 2.8 At2g16870 816188 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. H.G. S.X.
0.09 2.8 At1g18860 838467 WRKY61 member of WRKY Transcription Factor; Group II-b O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.89	94.6	At1g53620	841797	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV	O.I.	H.G.	S.X.
0.57	73.8	At1g65130	842820	ubiquitin carboxyl-terminal hydrolase-related	F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POMFB	O.I.	H.G.	S.X.
0.56	73.0	At5g51360	835210	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.53	68.6	At1g57570	842133	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.52	67.4	At3g53820	824549	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion, intracellular;PMO	O.I.	H.G.	S.X.
0.50	65.3	At1g33870	840284	avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative	F:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOB	O.I.	H.G.	S.X.
0.46	59.8	At3g58300	824999	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.46	59.8	At2g36820	-	-	-	O.I.	H.G.	S.X.
0.45	58.3	At2g23440	816876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.45	58.3	At5g04650	830342	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.44	57.2	At4g21780	828266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	At3g44440	823569	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	At5g35870	833573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.43	55.3	At1g53940	841833	GLIP2	Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance	O.I.	H.G.	S.X.
0.43	55.3	At1g26350	839177	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.42	53.9	At5g16160	831474	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.42	53.9	At3g50150	824177	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.40	50.8	At2g18070	816319	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.40	50.8	At5g17720	831639	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFVA	O.I.	H.G.	S.X.
0.38	46.7	At1g59725	842265	DNAJ heat shock protein, putative	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV	O.I.	H.G.	S.X.
0.37	45.0	At4g13480	826980	AtMYB79 (myb domain protein 79)	Member of the R2R3 factor gene family.	O.I.	H.G.	S.X.
0.36	43.6	At2g35080	818074	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	F:aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;P	O.I.	H.G.	S.X.
0.36	43.6	At3g04270	819582	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.36	43.6	At2g05890	815141	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.36	43.6	At5g17200	831584	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA	O.I.	H.G.	S.X.
0.35	41.6	At2g02380	814769	ATGSTZ2	Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	H.G.	S.X.
0.35	41.6	At1g50190	3767425	-	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown	O.I.	H.G.	S.X.
0.35	41.6	At2g02440	814774	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.33	38.1	At3g32050	822960	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.32	35.7	At1g51900	841617	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPVA	O.I.	H.G.	S.X.
0.31	33.8	At5g28170	832893	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.31	33.8	At4g21370	827889	S-locus protein kinase, putative	The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1.	O.I.	H.G.	S.X.
0.29	30.3	At2g29100	817458	ATGLR2.9	member of Putative ligand-gated ion channel subunit family	O.I.	H.G.	S.X.
0.29	30.3	At4g36510	829803	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.28	30.3	At3g58390	825008	eukaryotic release factor 1 family protein / eRF1 family protein	F:translation release factor activity;P:translational termination, translation;C:nucleus;OAMFPV	O.I.	H.G.	S.X.
0.27	26.2	At1g33880	840285	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:N-terminal protein myristoylation, response to bacterium;C:cellular_component unknown;MPO	O.I.	H.G.	S.X.
0.27	26.2	At1g67635	843087	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.26	24.4	At4g20290	827776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM	O.I.	H.G.	S.X.
0.26	24.4	At1g11970	837749	-	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPFOV	O.I.	H.G.	S.X.
0.26	24.4	At2g02650	814794	reverse transcriptase-related	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	H.G.	S.X.
0.25	22.6	At1g69820	843318	GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3)	F:gamma-glutamyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	H.G.	S.X.
0.25	22.6	At5g58890	836006	AGL82 (AGAMOUS-LIKE 82)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	H.G.	S.X.
0.25	22.6	At1g54230	841864	DNA binding	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;PF	O.I.	H.G.	S.X.
0.25	22.6	At2g27375	817281	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.25	22.6	At5g37910	833770	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF	O.I.	H.G.	S.X.
0.25	22.6	At2g19960	816515	hAT dimerisation domain-containing protein / transposase-related	F:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	H.G.	S.X.
0.24	20.7	At3g26390	822243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.23	19.3	At1g15840	838154	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA	O.I.	H.G.	S.X.
0.23	19.3	At5g07780	830671	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVA	O.I.	H.G.	S.X.
0.22	17.5	At2g30120	817564	unknown protein	F:unknown;P:unknown;C:unknown;POMBAF	O.I.	H.G.	S.X.
0.22	17.5	At4g01110	827897	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.21	15.8	At3g13840	820596	scarecrow transcription factor family protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PB	O.I.	H.G.	S.X.
0.21	15.8	At3g47910	823946	ubiquitin thiolesterase/ zinc ion binding	F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFPBAV	O.I.	H.G.	S.X.
0.19	12.7	At5g56830	3771525	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.19	12.7	At1g53600	841795	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA	O.I.	H.G.	S.X.
0.19	12.7	At5g49750	835038	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	H.G.	S.X.
0.18	11.4	At2g04300	814968	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.18	11.4	At4g23970	828497	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.18	11.4	At5g15060	831358	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.17	10.2	At3g53590	824527	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	H.G.	S.X.
0.17	10.2	At3g45110	823647	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.17	10.2	At2g05180	815066	CYP705A6	member of CYP705A	O.I.	H.G.	S.X.
0.17	10.2	At2g23040	816834	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.16	8.8	At2g20660	816594	RALFL14 (ralf-like 14)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	H.G.	S.X.
0.16	8.8	At4g22650	828361	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.16	8.8	At2g26420	817182	PIP5K3 (1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3)	Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth.	O.I.	H.G.	S.X.
0.16	8.8	At3g58230	824992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.16	8.8	At5g65500	836676	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ ubiquitin-protein ligase	F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;PMOBFVA	O.I.	H.G.	S.X.
0.15	7.8	At4g31960	829326	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.12	4.9	At2g43730	818975	lectin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.12	4.9	At2g31020	817653	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A)	F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPBV	O.I.	H.G.	S.X.
0.09	2.8	At2g16870	816188	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	H.G.	S.X.
0.09	2.8	At1g18860	838467	WRKY61	member of WRKY Transcription Factor; Group II-b	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Ptp.3643.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g53620: unknown protein (HF=7e-3)
Module size	6 genes
NF	0.64
%ile	93.2

Co-expression analysis

Gene ID Ptp.3643.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At1g53620: unknown protein (HF=7e-3) Module size 6 genes NF 0.64 %ile 93.2

Co-expressed genes

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Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.3643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g53620: unknown protein (HF=7e-3)

Module size 6 genes

NF 0.64

%ile 93.2

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays