Co-expression analysis

Gene ID	Ptp.3634.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g44760: universal stress protein (USP) family protein (HF=8e-3)
Module size	11 genes
NF	0.60
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.90	Ptp.3634.1.S1_at	BU835082	hypothetical protein	-	8e-3	At1g44760	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.76	94.3	0.93	Ptp.4665.1.A1_s_at	CV268985	hypothetical protein	-	8e-34	At1g44110	CYCA1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.72	92.7	0.92	PtpAffx.209751.1.S1_at	pmrna19244	hypothetical protein	-	5e-37	At4g21270	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.93	PtpAffx.21767.3.A1_at	CV256188	hypothetical protein	-	3e-5	At4g15140	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.93	PtpAffx.146048.1.A1_at	CX177282	hypothetical protein	-	1e+0	At5g42957	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.91	PtpAffx.982.1.A1_at	CV258294	hypothetical protein	-	2e+0	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.93	Ptp.1602.1.S1_at	AY307372.1	hypothetical protein	-	8e-102	At1g20930	CDKB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.18355.1.S1_at	CV253470	hypothetical protein	-	2e-1	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.92	PtpAffx.127433.1.A1_at	CV257930	cyclin b	-	5e-3	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.92	Ptp.2751.1.S1_at	DN490334	condensin complex components subunit /// condensin complex components subunit	-	1e-87	At3g47460	ATSMC2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.56737.2.A1_a_at	CX174790	hypothetical protein	-	3e-41	At4g33260	CDC20.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6	96.2	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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