Co-expression analysis

Gene ID	Ptp.3629.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g02590: - (HF=1e-20)
Module size	6 genes
NF	0.36
%ile	62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.94	Ptp.3629.1.S1_at	DN492509	hypothetical protein	-	1e-20	At2g02590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.206937.1.S1_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.144999.1.A1_s_at	CV244449	hypothetical protein	-	4e-1	At2g47840	tic20 protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.49222.1.S1_at	BP930894	hypothetical protein	-	9e-25	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.19666.1.A1_at	CV229370	hypothetical protein	-	3e-33	At1g09795	ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	PtpAffx.206937.1.S1_x_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.8851.1.A1_at, orthologous to the query gene, Ptp.3629.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	86.1	Zm.8851.1.A1_at	At2g02590	hypothetical protein LOC100273078	-	3e-6	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.5787.2.S1_at	At2g02590	hypothetical protein LOC100273050	-	4e-1	At5g48790	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.16532.1.A1_a_at	At2g02590	60S ribosomal protein L18a	-	5e-44	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.16859.1.A1_at	At2g02590	hypothetical protein LOC100217299 /// ATP11 protein	-	8e+0	At4g03945	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.12143.1.S1_at	At2g02590	-	-	2e+0	At5g55560	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.2483.1.A1_at	At2g02590	hypothetical protein LOC100275206	-	8e+0	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.10645.1.S1_at	At2g02590	-	-	3e+0	At5g40700	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.7914.1.A1_at	At2g02590	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.847.1.S1_at	At2g02590	hypothetical protein LOC100274400	-	1e-1	At1g02360	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.569.1.A1_at	At2g02590	protein kinase CK2 catalytic subunit CK2 alpha-3	-	3e-96	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.12806.1.A1_at	At2g02590	-	-	2e-1	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	O.I.	H.G.	S.X.	Please select
0.17	10.6	ZmAffx.1137.1.S1_at	At2g02590	-	-	3e+1	At5g63000	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.6732.5.S1_at	At2g02590	-	-	2e-14	At1g17220	FUG1 (fu-gaeri1)	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.1194.1.S1_at	At2g02590	fasciclin-like arabinogalactan protein 10	-	2e-1	At5g52930	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.8276.1.A1_at	At2g02590	-	-	3e-2	At1g53560	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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