Co-expression analysis

Gene ID	Ptp.3629.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g02590: - (HF=1e-20)
Module size	6 genes
NF	0.36
%ile	62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.94	Ptp.3629.1.S1_at	DN492509	hypothetical protein	-	1e-20	At2g02590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.206937.1.S1_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.144999.1.A1_s_at	CV244449	hypothetical protein	-	4e-1	At2g47840	tic20 protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.49222.1.S1_at	BP930894	hypothetical protein	-	9e-25	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.19666.1.A1_at	CV229370	hypothetical protein	-	3e-33	At1g09795	ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	PtpAffx.206937.1.S1_x_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.33157.1.S1_at, orthologous to the query gene, Ptp.3629.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	92.6	GmaAffx.33157.1.S1_at	At2g02590	-	-	3e+0	At5g23350	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.89	93.5	GmaAffx.37697.1.S1_at	At2g02590	-	-	4e+0	At4g09970	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	93.2	GmaAffx.62093.1.A1_at	At2g02590	-	-	6e-1	At3g54180	CDKB1	O.I.	H.G.	S.X.	Please select
0.86	93.0	GmaAffx.15803.1.S1_at	At2g02590	-	-	2e-1	At3g48660	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	Gma.3400.1.S1_at	At2g02590	-	-	2e+0	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.85	92.8	GmaAffx.50632.1.A1_at	At2g02590	-	-	2e-1	At5g43330	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select
0.84	92.6	Gma.13204.1.S1_at	At2g02590	-	-	2e-8	At1g29520	AWPM-19-like membrane family protein	O.I.	H.G.	S.X.	Please select
0.84	92.6	GmaAffx.48977.1.S1_at	At2g02590	-	-	8e-2	At4g12280	copper amine oxidase family protein	O.I.	H.G.	S.X.	Please select
0.84	92.6	GmaAffx.28001.1.S1_at	At2g02590	-	-	3e+0	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.84	92.6	GmaAffx.66982.1.S1_at	At2g02590	-	-	2e-1	At1g08220	-	O.I.	H.G.	S.X.	Please select
0.83	92.5	GmaAffx.10323.1.S1_at	At2g02590	-	-	1e+0	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	O.I.	H.G.	S.X.	Please select
0.83	92.5	Gma.13980.1.S1_at	At2g02590	-	-	2e+0	At3g49744	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	GmaAffx.27927.1.S1_at	At2g02590	-	-	8e-1	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.82	91.9	GmaAffx.63553.1.S1_at	At2g02590	-	-	4e-3	At1g14730	-	O.I.	H.G.	S.X.	Please select
0.82	91.9	GmaAffx.44716.1.A1_at	At2g02590	-	-	7e-1	At4g35970	APX5 (ASCORBATE PEROXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.81	91.7	Gma.5789.1.S1_at	At2g02590	-	-	5e-4	At3g20570	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.81	91.7	GmaAffx.73021.1.S1_at	At2g02590	-	-	2e-5	At4g35970	APX5 (ASCORBATE PEROXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.80	91.5	Gma.13204.2.A1_at	At2g02590	-	-	8e-1	At3g57270	BG1 (BETA-1,3-GLUCANASE 1)	O.I.	H.G.	S.X.	Please select
0.79	90.8	Gma.17136.1.S1_s_at	At2g02590	-	-	6e-1	At1g34270	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	Gma.5253.1.A1_at	At2g02590	-	-	6e-3	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.	Please select
0.74	89.2	GmaAffx.59762.1.A1_at	At2g02590	-	-	3e-1	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please select
0.71	87.8	GmaAffx.8378.1.A1_at	At2g02590	-	-	7e-2	At5g40860	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.5256.1.A1_at	At2g02590	-	-	3e+0	At3g23165	LCR42 (Low-molecular-weight cysteine-rich 42)	O.I.	H.G.	S.X.	Please select
0.68	86.4	GmaAffx.49959.1.S1_at	At2g02590	-	-	1e+0	At4g12760	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.61272.1.S1_at	At2g02590	-	-	1e-2	At4g26130	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	GmaAffx.77506.1.S1_at	At2g02590	-	-	8e-1	At5g05270	chalcone-flavanone isomerase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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