CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.3629.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g02590: - (HF=1e-20)

Module size 6 genes

NF 0.36

%ile 62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 0.94 Ptp.3629.1.S1_at DN492509 hypothetical protein - 1e-20 At2g02590 - O.I. H.G. S.X.
0.60 86.0 0.95 PtpAffx.206937.1.S1_at pmrna13762 hypothetical protein - 2e-71 At3g20320 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.144999.1.A1_s_at CV244449 hypothetical protein - 4e-1 At2g47840 tic20 protein-related O.I. H.G. S.X.
0.40 67.0 0.96 PtpAffx.49222.1.S1_at BP930894 hypothetical protein - 9e-25 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) O.I. H.G. S.X.
0.25 43.6 0.96 PtpAffx.19666.1.A1_at CV229370 hypothetical protein - 3e-33 At1g09795 ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) O.I. H.G. S.X.
0.13 21.6 0.94 PtpAffx.206937.1.S1_x_at pmrna13762 hypothetical protein - 2e-71 At3g20320 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.3 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g02590, orthologous to the query gene, Ptp.3629.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g02590 814789 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BAOP O.I. H.G. S.X.
0.22 17.5 At5g17660 831632 tRNA (guanine-N7-)-methyltransferase F:tRNA (guanine-N7-)-methyltransferase activity;P:tRNA modification;C:chloroplast;BOMPF O.I. H.G. S.X.
0.18 11.4 At2g03050 814834 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.15 7.8 At5g42670 834276 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;PMO O.I. H.G. S.X.
0.13 5.8 At5g17630 831629 glucose-6-phosphate/phosphate translocator, putative F:antiporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:chloroplast;PMFOBA O.I. H.G. S.X.
0.07 1.9 At2g39290 818514 PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria. O.I. H.G. S.X.
0.05 1.1 At4g33520 829490 PAA1 (P-TYPE ATP-ASE 1) Encodes a putative metal-transporting P-type ATPase. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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