Co-expression analysis

Gene ID Ptp.3625.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g07560: PEX13 (PEROXIN 13) (HF=2e-12)
Module size 11 genes
NF 0.32
%ile 56.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.96Ptp.3625.1.A1_atCV267089hypothetical protein-2e-12At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.4268.60.96Ptp.2014.1.S1_s_atCV258759hypothetical protein-2e-50At4g29490aminopeptidase/ manganese ion bindingO.I.H.G.S.X.
0.4067.00.97PtpAffx.108603.1.A1_s_atCV279639hypothetical protein-8e-1At5g59420ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)O.I.H.G.S.X.
0.3863.70.96PtpAffx.108517.1.A1_atCV236445hypothetical protein-3e-14At5g35460unknown proteinO.I.H.G.S.X.
0.3458.30.96PtpAffx.203451.1.S1_atpmrna6871hypothetical protein-5e-9At1g04790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.30368.1.S1_atCV254627hypothetical protein-1e-1At1g76180ERD14 (EARLY RESPONSE TO DEHYDRATION 14)O.I.H.G.S.X.
0.3052.00.96PtpAffx.74520.1.S1_s_atCV275234hypothetical protein-7e-57At3g01090AKIN10 (Arabidopsis SNF1 kinase homolog 10)O.I.H.G.S.X.
0.2950.50.97PtpAffx.12741.1.A1_atCV234093--8e-2At4g08230glycine-rich proteinO.I.H.G.S.X.
0.2747.10.96PtpAffx.211018.1.S1_atpmrna21651hypothetical protein-2e-152At5g28850calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2034.60.96PtpAffx.72180.1.S1_s_atAI162185hypothetical protein-4e-13At3g51040RTH (RTE1-HOMOLOG)O.I.H.G.S.X.
0.1525.30.96PtpAffx.1257.4.S1_a_atCX180448hypothetical protein-2e-30At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.193.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.992.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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