Co-expression analysis

Gene ID	Ptp.3625.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g07560: PEX13 (PEROXIN 13) (HF=2e-12)
Module size	11 genes
NF	0.32
%ile	56.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.96	Ptp.3625.1.A1_at	CV267089	hypothetical protein	-	2e-12	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	Ptp.2014.1.S1_s_at	CV258759	hypothetical protein	-	2e-50	At4g29490	aminopeptidase/ manganese ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.108603.1.A1_s_at	CV279639	hypothetical protein	-	8e-1	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.108517.1.A1_at	CV236445	hypothetical protein	-	3e-14	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.96	PtpAffx.203451.1.S1_at	pmrna6871	hypothetical protein	-	5e-9	At1g04790	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.30368.1.S1_at	CV254627	hypothetical protein	-	1e-1	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.74520.1.S1_s_at	CV275234	hypothetical protein	-	7e-57	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.211018.1.S1_at	pmrna21651	hypothetical protein	-	2e-152	At5g28850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	PtpAffx.72180.1.S1_s_at	AI162185	hypothetical protein	-	4e-13	At3g51040	RTH (RTE1-HOMOLOG)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.96	PtpAffx.1257.4.S1_a_at	CX180448	hypothetical protein	-	2e-30	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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