Co-expression analysis

Gene ID	Ptp.3609.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g05960: binding (HF=5e-6)
Module size	6 genes
NF	0.03
%ile	7.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.90	Ptp.3609.1.S1_at	DN502750	hypothetical protein	-	5e-6	At1g05960	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.91	Ptp.3283.1.S1_at	DN485660	-	-	1e+0	At4g21216	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	Ptp.4351.1.S1_at	DN489305	-	-	3e+0	At4g23610	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.91	PtpAffx.78715.1.S1_at	BU890250	-	-	1e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.91	Ptp.8104.1.S1_at	DN492365	-	-	3e-1	At1g57780	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.90	Ptp.4291.1.S1_at	DN499426	-	-	2e+0	At3g44220	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage