Co-expression analysis

Gene ID Ptp.3507.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g09970: LRR XI-23 (HF=3e-6)
Module size 11 genes
NF 0.34
%ile 59.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.94Ptp.3507.1.S1_s_atBP931120--3e-6At1g09970LRR XI-23O.I.H.G.S.X.
0.5279.40.95PtpAffx.3096.2.S1_a_atCF231355hypothetical protein-5e-7At2g25900ATCTHO.I.H.G.S.X.
0.3559.70.96Ptp.333.1.S1_atCK088426hypothetical protein-6e-7At4g12040zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.3357.50.95PtpAffx.201765.1.S1_atpmrna3523NAC domain protein, IPR003441-2e-11At1g34190anac017 (Arabidopsis NAC domain containing protein 17)O.I.H.G.S.X.
0.3153.70.96PtpAffx.212106.1.S1_atpmrna23742calcium dependent protein kinase 12-5e-33At5g23580CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)O.I.H.G.S.X.
0.2950.50.96PtpAffx.163436.1.S1_s_atCK107725hypothetical protein-9e-20At1g31930XLG3 (extra-large GTP-binding protein 3)O.I.H.G.S.X.
0.2850.50.95Ptp.5801.2.S1_a_atBU836809hypothetical protein-2e+0At1g24440protein binding / zinc ion bindingO.I.H.G.S.X.
0.2747.10.95PtpAffx.98904.1.S1_s_atDN497312hypothetical protein-3e-2At5g55860unknown proteinO.I.H.G.S.X.
0.2645.20.96PtpAffx.17949.1.A1_a_atCV230098hypothetical protein-3e-17At5g13190-O.I.H.G.S.X.
0.2340.50.96PtpAffx.158349.1.S1_atCN518758hypothetical protein-1e-4At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)O.I.H.G.S.X.
0.1729.10.96PtpAffx.158349.2.S1_s_atAJ776596hypothetical protein-4e-4At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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