Co-expression analysis

Gene ID	Ptp.3447.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g06000: leucine-rich repeat family protein (HF=2e+0)
Module size	14 genes
NF	0.81
%ile	99.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.90	Ptp.3447.1.A1_at	DN492951	-	-	2e+0	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.90	PtpAffx.224460.1.S1_x_at	pmrna43015	hypothetical protein	-	6e-1	At2g38780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.92	PtpAffx.225048.1.S1_at	pmrna44125	hypothetical protein	-	2e-1	At1g48980	oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.94	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.90	PtpAffx.13927.1.S1_at	CX660204	hypothetical protein	-	2e-6	At5g19300	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.92	PtpAffx.144822.1.S1_at	DN500556	-	-	1e+0	At5g66650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.92	PtpAffx.220631.1.S1_at	pmrna37041	hypothetical protein	-	7e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.84	97.1	0.90	Ptp.7970.1.S1_at	DN502791	-	-	4e+0	At2g35070	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.79	95.3	0.93	PtpAffx.140514.1.A1_at	CV255394	-	-	2e-1	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.88	Ptp.7132.2.S1_at	DN494473	-	-	4e-1	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.90	PtpAffx.225709.1.S1_at	pmrna45266	-	-	4e-1	At3g19030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.216324.1.S1_x_at	pmrna31034	hypothetical protein	-	4e+0	At4g05553	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.94	PtpAffx.214797.1.S1_at	pmrna28647	hypothetical protein	-	3e-34	At5g13650	elongation factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.91	PtpAffx.99892.1.S1_at	BU869133	hypothetical protein	-	2e+0	At2g40380	PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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