Co-expression analysis

Gene ID	Ptp.3445.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g20910: zinc finger (C3HC4-type RING finger) family protein (HF=1e+0)
Module size	6 genes
NF	0.19
%ile	35.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	67.0	0.86	Ptp.3445.1.S1_at	DN502972	-	-	1e+0	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.89	PtpAffx.7785.4.A1_at	CV265733	hypothetical protein	-	1e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.90	Ptp.5235.1.S1_s_at	CK110349	hypothetical protein	-	1e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.89	PtpAffx.249.292.A1_at	CV260437	hypothetical protein	-	3e-2	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.89	PtpAffx.127631.1.A1_at	CV250993	bile acid:Na+ symporter family protein	-	2e+0	At3g48590	NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.86	PtpAffx.42296.1.A1_at	BP931599	hypothetical protein	-	6e-1	At2g29460	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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