Co-expression analysis

Gene ID	Ptp.3333.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g63940: monodehydroascorbate reductase, putative (HF=2e-12)
Module size	6 genes
NF	0.60
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	Ptp.3333.2.A1_at	CX658805	-	-	2e-12	At1g63940	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.92	PtpAffx.192.1.S1_at	DN487464	hypothetical protein	-	2e+1	At5g60190	Ulp1 protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.87	PtpAffx.212132.1.S1_s_at	pmrna23792	hypothetical protein	-	3e-1	At1g69170	squamosa promoter-binding protein-like 6 (SPL6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	Ptp.5713.2.S1_a_at	AJ557585.1	high affinity nitrate transporter	-	7e-6	At5g60770	ATNRT2.4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.52100.1.A1_at	CK097825	hypothetical protein	-	1e-16	At5g25250	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	Ptp.1044.1.S1_at	CF235854	hypothetical protein	-	3e-33	At4g05390	ATRFNR1 (ROOT FNR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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