Co-expression analysis

Gene ID	Ptp.3328.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g40950: BZIP17 (HF=1e-7)
Module size	9 genes
NF	0.42
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	84.2	0.95	Ptp.3328.1.S1_s_at	CV264792	hypothetical protein	-	1e-7	At2g40950	BZIP17	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	Ptp.1196.1.A1_at	CV228560	chromatin remodeling complex subunit	-	2e-12	At2g46020	transcription regulatory protein SNF2, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	PtpAffx.1099.1.A1_s_at	CV279908	hypothetical protein	-	2e-47	At2g19830	SNF7.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	PtpAffx.19036.1.S1_at	CV267106	hypothetical protein	-	5e-26	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	PtpAffx.249.256.S1_at	CV238174	-	-	4e-26	At2g24360	serine/threonine/tyrosine kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.282.2.S1_at	CV231057	hypothetical protein	-	7e-21	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.34991.1.A1_at	CV261322	hypothetical protein	-	6e-50	At4g26610	D6PKL1 (D6 PROTEIN KINASE LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.97	PtpAffx.3784.2.A1_at	CV228383	hypothetical protein	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.97	PtpAffx.99112.1.A1_s_at	CV277001	hypothetical protein	-	6e+0	At3g57810	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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