Co-expression analysis

Gene ID Ptp.325.1.A1_s_at
Gene name cytochrome P450
Homology with ArabidopsisSimilar to At1g01190: CYP78A8 (HF=7e-3)
Module size 6 genes
NF 0.55
%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3964.60.93Ptp.325.1.A1_s_atCK088352cytochrome P450-7e-3At1g01190CYP78A8O.I.H.G.S.X.
0.8096.00.95PtpAffx.203780.1.S1_atpmrna7465hypothetical protein-1e-4At3g09020alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinO.I.H.G.S.X.
0.6791.10.95PtpAffx.224333.1.S1_x_atpmrna42787hypothetical protein-1e-1At1g74090SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)O.I.H.G.S.X.
0.6791.10.95PtpAffx.224333.1.S1_atpmrna42787hypothetical protein-1e-1At1g74090SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)O.I.H.G.S.X.
0.4471.90.95PtpAffx.158656.2.S1_atCX654035hypothetical protein-1e-4At3g08030unknown proteinO.I.H.G.S.X.
0.3357.50.95Ptp.7632.1.S1_atDN497977ZIP transporter-2e-1At5g59520ZIP2O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.60.93PtpAffx.200207.1.S1_atpmrna393hypothetical protein-2e-28At3g24240leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.4471.90.93PtpAffx.200837.1.S1_atpmrna1629hypothetical protein-6e-4At3g51970AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)O.I.H.G.S.X.
0.3863.70.93PtpAffx.908.1.S1_atCV263697hypothetical protein-5e+0At4g33720pathogenesis-related protein, putativeO.I.H.G.S.X.
0.3357.50.94PtpAffx.207296.1.S1_atpmrna14470hypothetical protein-2e-4At4g37160sks15 (SKU5 Similar 15)O.I.H.G.S.X.
0.2645.20.93Ptp.4115.1.S1_atAJ777870hypothetical protein-1e-1At1g72150PATL1 (PATELLIN 1)O.I.H.G.S.X.
0.2645.20.83PtpAffx.59126.1.S1_s_atCA826047hypothetical protein-2e+0At4g01897unknown proteinO.I.H.G.S.X.
0.2543.60.93Ptp.5520.1.S1_atCK099052cytochrome P450-2e-19At3g61880CYP78A9 (CYTOCHROME P450 78A9)O.I.H.G.S.X.
0.2340.50.94Ptp.6857.1.S1_atBU833205hypothetical protein-6e-9At1g20590cyclin, putativeO.I.H.G.S.X.
0.2340.50.91Ptp.2993.1.S1_atCX658401hypothetical protein-7e-12At3g02885GASA5 (GAST1 PROTEIN HOMOLOG 5)O.I.H.G.S.X.
0.2238.30.95Ptp.7764.1.S1_atDN489656hypothetical protein-5e+0At5g49170unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.095.3GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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