Co-expression analysis

Gene ID Ptp.325.1.A1_s_at
Gene name cytochrome P450
Homology with ArabidopsisSimilar to At1g01190: CYP78A8 (HF=7e-3)
Module size 6 genes
NF 0.55
%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3964.60.93Ptp.325.1.A1_s_atCK088352cytochrome P450-7e-3At1g01190CYP78A8O.I.H.G.S.X.
0.8096.00.95PtpAffx.203780.1.S1_atpmrna7465hypothetical protein-1e-4At3g09020alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinO.I.H.G.S.X.
0.6791.10.95PtpAffx.224333.1.S1_x_atpmrna42787hypothetical protein-1e-1At1g74090SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)O.I.H.G.S.X.
0.6791.10.95PtpAffx.224333.1.S1_atpmrna42787hypothetical protein-1e-1At1g74090SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)O.I.H.G.S.X.
0.4471.90.95PtpAffx.158656.2.S1_atCX654035hypothetical protein-1e-4At3g08030unknown proteinO.I.H.G.S.X.
0.3357.50.95Ptp.7632.1.S1_atDN497977ZIP transporter-2e-1At5g59520ZIP2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.095.3GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1622687_at, orthologous to the query gene, Ptp.325.1.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81622687_atAt1g01190hypothetical protein LOC100258159-2e-6At1g01190CYP78A8O.I.H.G.S.X.
0.7390.81618601_s_atAt1g01190--8e-1At3g26690ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)O.I.H.G.S.X.
0.6081.91619322_atAt1g01190--5e+0At4g32030unknown proteinO.I.H.G.S.X.
0.5577.31618755_atAt1g01190--7e+0At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)O.I.H.G.S.X.
0.4057.71622844_atAt1g01190--5e+0At5g06480MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.3650.71621190_atAt1g01190--0Atcg01280-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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