Co-expression analysis

Gene ID	Ptp.325.1.A1_s_at
Gene name	cytochrome P450
Homology with Arabidopsis	Similar to At1g01190: CYP78A8 (HF=7e-3)
Module size	6 genes
NF	0.55
%ile	85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.39	64.6	0.93	Ptp.325.1.A1_s_at	CK088352	cytochrome P450	-	7e-3	At1g01190	CYP78A8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	PtpAffx.203780.1.S1_at	pmrna7465	hypothetical protein	-	1e-4	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.158656.2.S1_at	CX654035	hypothetical protein	-	1e-4	At3g08030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, HVSMEl0011L15f2_s_at, orthologous to the query gene, Ptp.325.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	HVSMEl0011L15f2_s_at	At1g01190	-	-	4e-2	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig9703_at	At1g01190	-	-	3e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig17513_at	At1g01190	-	-	4e-4	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig17523_at	At1g01190	-	-	7e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig4591_at	At1g01190	-	-	4e-2	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.	Please select
0.46	61.0	HM02P13u_s_at	At1g01190	-	-	6e+0	At5g47980	transferase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig22861_at	At1g01190	-	-	7e+0	At3g59880	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig23565_at	At1g01190	-	-	2e+0	At4g14819	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	HW08B21u_s_at	At1g01190	-	-	1e+1	At5g23903	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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