Co-expression analysis

Gene ID	Ptp.3245.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g32290: BAM6 (BETA-AMYLASE 6) (HF=7e-14)
Module size	9 genes
NF	0.64
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.90	Ptp.3245.1.S1_s_at	CV276464	hypothetical protein	-	7e-14	At2g32290	BAM6 (BETA-AMYLASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.92	PtpAffx.208791.1.S1_at	pmrna17425	hypothetical protein	-	4e-2	At2g37470	histone H2B, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.90	PtpAffx.225183.1.S1_at	pmrna44337	tir-nbs-lrr resistance protein	-	6e-4	At4g19510	disease resistance protein (TIR-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.89	PtpAffx.214710.1.S1_s_at	pmrna28534	tir-nbs-lrr resistance protein /// hypothetical protein	-	3e-2	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	PtpAffx.75830.1.A1_at	CN520644	hypothetical protein	-	2e-2	At3g48630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.92	PtpAffx.20320.1.A1_s_at	CK090536	hypothetical protein	-	4e-1	At1g67195	MIR414 (MICRORNA 414)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.91	PtpAffx.143505.1.S1_at	DN501335	hypothetical protein	-	2e-8	At2g34585	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.14948.1.S1_at	CN517401	hypothetical protein	-	8e-9	At4g35790	ATPLDDELTA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.92	PtpAffx.50325.1.A1_at	CV249272	-	-	2e+0	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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