Co-expression analysis

Gene ID	Ptp.3185.1.S1_x_at
Gene name	phenylalanine amonnia lyase
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=2e-33)
Module size	6 genes
NF	0.09
%ile	18.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.88	Ptp.3185.1.S1_x_at	AF480620.1	phenylalanine amonnia lyase	-	2e-33	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.224868.1.S1_at	pmrna43757	-	-	8e-5	At1g67520	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.89	PtpAffx.12443.3.A1_at	BU896102	-	-	9e-5	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.90	PtpAffx.209626.1.S1_at	pmrna19021	hypothetical protein	-	3e-113	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.90	PtpAffx.200598.1.S1_x_at	pmrna1181	hypothetical protein	-	3e-14	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.90	PtpAffx.200598.1.S1_at	pmrna1181	hypothetical protein	-	3e-14	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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