Co-expression analysis

Gene ID	Ptp.3185.1.S1_at
Gene name	phenylalanine amonnia lyase
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=2e-33)
Module size	7 genes
NF	0.29
%ile	52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.88	Ptp.3185.1.S1_at	AF480620.1	phenylalanine amonnia lyase	-	2e-33	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.88	PtpAffx.140060.1.A1_at	CV274189	-	-	1e+1	Atmg00870	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.88	PtpAffx.218090.1.S1_at	pmrna33613	hypothetical protein	-	7e-1	At3g55920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.221797.1.S1_s_at	pmrna38853	hypothetical protein	-	8e-1	At1g24210	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.89	PtpAffx.214981.1.S1_at	pmrna28917	hypothetical protein	-	3e+1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.89	PtpAffx.202211.1.S1_at	pmrna4430	hypothetical protein	-	1e-1	At2g34990	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.88	PtpAffx.11036.1.A1_at	CV283821	-	-	1e+0	At5g16800	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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