Co-expression analysis

Gene ID Ptp.3043.1.S1_s_at
Gene name 4-Coumarate:CoA ligase
Homology with ArabidopsisSimilar to At1g51680: 4CL1 (4-COUMARATE:COA LIGASE 1) (HF=3e-13)
Module size 6 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.93Ptp.3043.1.S1_s_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.6791.10.96PtpAffx.12443.4.A1_s_atCV240107cytochrome P450 cinnamate 4-hydroxylase-7e-24At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.4673.70.93PtpAffx.108986.1.S1_atAJ777271hypothetical protein-3e-38At5g54800GPT1O.I.H.G.S.X.
0.3559.70.93PtpAffx.283.14.A1_x_atCV272972hypothetical protein-2e-34At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.3357.50.93Ptp.791.1.S1_s_atCK087231cinnamyl alcohol dehydrogenase-6e-26At3g19450ATCAD4O.I.H.G.S.X.
0.3357.50.93PtpAffx.1193.1.S1_atCV227263coniferylaldehyde 5- hydroxylase-6e-5At4g36220FAH1 (FERULIC ACID 5-HYDROXYLASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1609307_at, orthologous to the query gene, Ptp.3043.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6081.91609307_atAt1g51680hypothetical protein LOC100254698-3e-16At3g212404CL2 (4-COUMARATE:COA LIGASE 2)O.I.H.G.S.X.
0.6081.91616191_s_atAt1g51680hypothetical protein LOC100253493-6e-48At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.5779.81610821_atAt1g51680hypothetical protein LOC100253493-6e-48At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.099.41612186_atAt1g51680hypothetical protein LOC100241494-1e+1At5g18250unknown proteinO.I.H.G.S.X.
0.088.51615742_atAt1g516805-enolpyruvylshikimate-3-phosphate synthase-8e-121At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.
0.034.21621366_s_atAt1g51680hypothetical protein LOC100259669-4e-1At3g20450-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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