Co-expression analysis

Gene ID	Ptp.3030.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g79440: ALDH5F1 (HF=6e-15)
Module size	6 genes
NF	0.38
%ile	64.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.96	Ptp.3030.1.S1_s_at	DN484799	hypothetical protein	-	6e-15	At1g79440	ALDH5F1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.27171.1.A1_at	CV229989	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.1913.1.A1_at	CV263831	hypothetical protein	-	5e-1	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.1694.1.S1_s_at	CK093498	hypothetical protein	-	6e-51	At5g60160	aspartyl aminopeptidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	PtpAffx.91950.1.S1_at	AJ773450	hypothetical protein	-	5e-16	At1g11020	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.96	PtpAffx.212805.1.S1_at	pmrna25058	hypothetical protein	-	4e-12	At3g26600	ARO4 (ARMADILLO REPEAT ONLY 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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