Co-expression analysis

Gene ID Ptp.2996.2.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g51680: hydroxyproline-rich glycoprotein family protein (HF=4e-10)
Module size 6 genes
NF 0.65
%ile 93.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.90Ptp.2996.2.A1_atCV255177hypothetical protein-4e-10At5g51680hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.8397.00.91PtpAffx.204411.1.S1_atpmrna8665hypothetical protein-1e-15At2g27370integral membrane family proteinO.I.H.G.S.X.
0.8096.00.93PtpAffx.206588.1.S1_atpmrna13065hypothetical protein-2e-26At5g06200integral membrane family proteinO.I.H.G.S.X.
0.6791.10.93PtpAffx.200218.1.S1_atpmrna408hypothetical protein-9e-5At4g13580disease resistance-responsive family proteinO.I.H.G.S.X.
0.5078.60.90PtpAffx.200219.1.S1_atpmrna409hypothetical protein-3e-23At3g24020disease resistance-responsive family proteinO.I.H.G.S.X.
0.2543.60.93PtpAffx.68974.1.A1_atCV276005hypothetical protein-7e-1At4g26950unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.7GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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