Co-expression analysis

Gene ID	Ptp.2927.2.S1_at
Gene name	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein
Homology with Arabidopsis	Similar to At5g06680: SPC98 (SPINDLE POLE BODY COMPONENT 98) (HF=5e-47)
Module size	9 genes
NF	0.33
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.94	Ptp.2927.2.S1_at	DN499742	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein	-	5e-47	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.95	Ptp.5438.1.S1_at	CK106216	hypothetical protein	-	1e-14	At1g80600	WIN1 (HOPW1-1-INTERACTING 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	Ptp.3945.1.S1_at	CF235619	hypothetical protein	-	1e-4	At2g16760	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.220765.1.S1_s_at	pmrna37189	hypothetical protein /// cyclic nucleotide-gated channel	-	4e-12	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	Ptp.6370.3.S1_a_at	CK091400	hypothetical protein	-	6e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.122535.1.S1_at	CX183941	-	-	7e-5	At1g52760	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.136498.1.S1_at	CF230021	hypothetical protein	-	6e-3	At1g52260	ATPDIL1-5 (PDI-LIKE 1-5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.95	Ptp.777.1.A1_at	CV236864	-	-	7e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	PtpAffx.200755.1.S1_s_at	pmrna1462	hypothetical protein	-	2e-46	At1g07380	ceramidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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