Co-expression analysis

Gene ID	Ptp.2886.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g20640: ethylene-responsive protein -related (HF=2e-2)
Module size	8 genes
NF	0.03
%ile	6.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.35	59.7	0.74	Ptp.2886.1.A1_at	DN492843	hypothetical protein	-	2e-2	At3g20640	ethylene-responsive protein -related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.77	PtpAffx.212450.1.S1_at	pmrna24388	type-a response regulator	-	6e-14	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.74	PtpAffx.216815.1.S1_at	pmrna31849	hypothetical protein	-	1e+1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.75	PtpAffx.223346.1.S1_at	pmrna41291	hypothetical protein	-	3e+1	At5g05950	MEE60 (maternal effect embryo arrest 60)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.74	Ptp.7054.1.S1_at	DN487831	hypothetical protein	-	5e-16	At4g14965	AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.75	PtpAffx.204489.1.S1_at	pmrna8810	hypothetical protein	-	8e-25	At1g76270	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.78	PtpAffx.208337.1.S1_at	pmrna16573	chromatin remodeling complex subunit	-	9e-1	At5g61440	ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.74	PtpAffx.223362.1.S1_at	pmrna41318	hypothetical protein	-	1e-37	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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