Co-expression analysis

Gene ID Ptp.2849.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g61450: SYP73 (SYNTAXIN OF PLANTS 73) (HF=6e+0)
Module size 7 genes
NF 0.23
%ile 41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4673.70.81Ptp.2849.2.A1_atDN484673--6e+0At3g61450SYP73 (SYNTAXIN OF PLANTS 73)O.I.H.G.S.X.
0.3661.60.80PtpAffx.217816.1.S1_atpmrna33230hypothetical protein-3e-3At5g50700short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2747.10.83PtpAffx.206887.1.S1_atpmrna13672hypothetical protein-4e+0At2g46030UBC6 (ubiquitin-conjugating enzyme 6)O.I.H.G.S.X.
0.2543.60.80PtpAffx.221080.1.S1_atpmrna37660hypothetical protein-2e+0At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.2136.50.80PtpAffx.153695.1.A1_atCV246282--2e+0At2g32020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.1932.70.81PtpAffx.224499.1.S1_atpmrna43089hypothetical protein-5e-12At5g59810SBT5.4O.I.H.G.S.X.
0.1118.10.80PtpAffx.203463.1.S1_atpmrna6897autoinhibited H+ ATPase-1e-44At3g42640AHA8 (Arabidopsis H(+)-ATPase 8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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