Co-expression analysis

Gene ID	Ptp.2804.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g69070: - (HF=2e-33)
Module size	6 genes
NF	0.45
%ile	74.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.87	Ptp.2804.1.S1_at	DN487761	hypothetical protein	-	2e-33	At1g69070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.86	PtpAffx.132011.1.S1_at	DN484384	-	-	2e-1	At3g62880	ATOEP16-4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.89	PtpAffx.214163.1.S1_at	pmrna27553	hypothetical protein	-	2e+0	At5g56070	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	PtpAffx.224692.1.S1_x_at	pmrna43495	hypothetical protein	-	4e-1	At1g19200	senescence-associated protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.213916.1.S1_at	pmrna27132	hypothetical protein	-	9e-1	At3g54826	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.87	PtpAffx.224164.1.S1_at	pmrna42440	hypothetical protein	-	2e-2	At1g69780	ATHB13	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage