Co-expression analysis

Gene ID Ptp.275.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g29390: COR314-TM2 (HF=1e-4)
Module size 7 genes
NF 0.04
%ile 8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.85Ptp.275.1.S1_atCK097963--1e-4At1g29390COR314-TM2O.I.H.G.S.X.
0.1321.60.92PtpAffx.43233.1.A1_atCV283197hypothetical protein-2e-40At2g45870unknown proteinO.I.H.G.S.X.
0.1219.60.89PtpAffx.26517.1.S1_atCK094602hypothetical protein-4e+0At3g53450unknown proteinO.I.H.G.S.X.
0.0711.60.91PtpAffx.203198.1.S1_atpmrna6338hypothetical protein-6e-8At1g62960ACS10 (ACC SYNTHASE 10)O.I.H.G.S.X.
0.035.20.84PtpAffx.172.2.S1_atCK094032--3e-5At5g14040mitochondrial phosphate transporterO.I.H.G.S.X.
0.035.20.87PtpAffx.63358.2.S1_a_atDN486399hypothetical protein-2e+0At5g46980invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.012.20.86PtpAffx.23528.1.S1_atCV228036hypothetical protein-6e-106At5g05200ABC1 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.684.2.A1_at, orthologous to the query gene, Ptp.275.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8392.5Gma.684.2.A1_atAt1g29390--2e-1At1g29395COR414-TM1O.I.H.G.S.X.
0.5273.1GmaAffx.16182.1.S1_s_atAt1g29390--4e+0At5g18150unknown proteinO.I.H.G.S.X.
0.4968.3Gma.3583.1.S1_atAt1g29390--3e-9At4g23630BTI1 (VIRB2-INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.3853.3Gma.942.1.S1_atAt1g29390--3e-11At1g75140unknown proteinO.I.H.G.S.X.
0.3751.7Gma.8018.1.S1_atAt1g29390--3e-17At5g64350FKBP12 (FK506-BINDING PROTEIN)O.I.H.G.S.X.
0.3142.2Gma.4356.1.S1_a_atAt1g29390--2e-99At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.3040.4Gma.11287.1.S1_atAt1g29390--1e-12At1g76200unknown proteinO.I.H.G.S.X.
0.2939.0Gma.12718.1.S1_atAt1g29390--5e-3At2g21190ER lumen protein retaining receptor family proteinO.I.H.G.S.X.
0.2839.0GmaAffx.6597.1.S1_atAt1g29390--9e-1At2g15430NRPB3O.I.H.G.S.X.
0.2633.9Gma.5685.1.S1_s_atAt1g29390--2e-15At3g15660GRX4 (GLUTAREDOXIN 4)O.I.H.G.S.X.
0.2633.9Gma.11353.1.S1_atAt1g29390--2e-3At1g78895-O.I.H.G.S.X.
0.2430.9GmaAffx.478.3.S1_s_atAt1g29390--2e-2At4g00755F-box family proteinO.I.H.G.S.X.
0.2430.9GmaAffx.4125.1.S1_atAt1g29390--5e-1At3g52520unknown proteinO.I.H.G.S.X.
0.2430.9Gma.7271.1.S1_atAt1g29390--2e-9At5g07120SNX2b (SORTING NEXIN 2b)O.I.H.G.S.X.
0.2228.1Gma.2150.1.S1_atAt1g29390--3e-21At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.2126.6Gma.4379.3.A1_a_atAt1g29390--8e-14At4g11150TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)O.I.H.G.S.X.
0.2025.1Gma.6945.1.A1_atAt1g29390--7e-11At4g26550-O.I.H.G.S.X.
0.2025.1Gma.9951.1.S1_atAt1g29390--3e-7At4g34700complex 1 family protein / LVR family proteinO.I.H.G.S.X.
0.1721.2Gma.8041.1.S1_atAt1g29390--1e-12At3g17210HS1 (HEAT STABLE PROTEIN 1)O.I.H.G.S.X.
0.1417.5GmaAffx.27321.1.S1_s_atAt1g29390--5e-1At3g06420ATG8H (autophagy 8h)O.I.H.G.S.X.
0.1316.3Gma.1856.1.S1_atAt1g29390--8e-39At3g23325splicing factor, putativeO.I.H.G.S.X.
0.1316.3Gma.9722.1.S1_atAt1g29390--5e-4At1g05720selenoprotein family proteinO.I.H.G.S.X.
0.1114.2GmaAffx.79047.1.S1_s_atAt1g29390--8e+0At1g53705ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage