Co-expression analysis

Gene ID	Ptp.275.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g29390: COR314-TM2 (HF=1e-4)
Module size	7 genes
NF	0.04
%ile	8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.85	Ptp.275.1.S1_at	CK097963	-	-	1e-4	At1g29390	COR314-TM2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.92	PtpAffx.43233.1.A1_at	CV283197	hypothetical protein	-	2e-40	At2g45870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.89	PtpAffx.26517.1.S1_at	CK094602	hypothetical protein	-	4e+0	At3g53450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.91	PtpAffx.203198.1.S1_at	pmrna6338	hypothetical protein	-	6e-8	At1g62960	ACS10 (ACC SYNTHASE 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.84	PtpAffx.172.2.S1_at	CK094032	-	-	3e-5	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.87	PtpAffx.63358.2.S1_a_at	DN486399	hypothetical protein	-	2e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.86	PtpAffx.23528.1.S1_at	CV228036	hypothetical protein	-	6e-106	At5g05200	ABC1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, Gma.684.2.A1_at, orthologous to the query gene, Ptp.275.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	Gma.684.2.A1_at	At1g29390	-	-	2e-1	At1g29395	COR414-TM1	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.16182.1.S1_s_at	At1g29390	-	-	4e+0	At5g18150	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.3583.1.S1_at	At1g29390	-	-	3e-9	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.942.1.S1_at	At1g29390	-	-	3e-11	At1g75140	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.8018.1.S1_at	At1g29390	-	-	3e-17	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.4356.1.S1_a_at	At1g29390	-	-	2e-99	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.11287.1.S1_at	At1g29390	-	-	1e-12	At1g76200	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.12718.1.S1_at	At1g29390	-	-	5e-3	At2g21190	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.6597.1.S1_at	At1g29390	-	-	9e-1	At2g15430	NRPB3	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.5685.1.S1_s_at	At1g29390	-	-	2e-15	At3g15660	GRX4 (GLUTAREDOXIN 4)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.11353.1.S1_at	At1g29390	-	-	2e-3	At1g78895	-	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.478.3.S1_s_at	At1g29390	-	-	2e-2	At4g00755	F-box family protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.4125.1.S1_at	At1g29390	-	-	5e-1	At3g52520	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.7271.1.S1_at	At1g29390	-	-	2e-9	At5g07120	SNX2b (SORTING NEXIN 2b)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.2150.1.S1_at	At1g29390	-	-	3e-21	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.4379.3.A1_a_at	At1g29390	-	-	8e-14	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.6945.1.A1_at	At1g29390	-	-	7e-11	At4g26550	-	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.9951.1.S1_at	At1g29390	-	-	3e-7	At4g34700	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.8041.1.S1_at	At1g29390	-	-	1e-12	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.27321.1.S1_s_at	At1g29390	-	-	5e-1	At3g06420	ATG8H (autophagy 8h)	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.1856.1.S1_at	At1g29390	-	-	8e-39	At3g23325	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.9722.1.S1_at	At1g29390	-	-	5e-4	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.79047.1.S1_s_at	At1g29390	-	-	8e+0	At1g53705	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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