Co-expression analysis

Gene ID Ptp.2609.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g31610: 40S ribosomal protein S3 (RPS3A) (HF=5e-100)
Module size 6 genes
NF 0.54
%ile 85.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.97Ptp.2609.1.S1_s_atCV275948hypothetical protein-5e-100At2g3161040S ribosomal protein S3 (RPS3A)O.I.H.G.S.X.
0.6791.10.97PtpAffx.1398.1.S1_atCV233963--3e-22At3g5602060S ribosomal protein L41 (RPL41G)O.I.H.G.S.X.
0.5784.20.97PtpAffx.17388.1.S1_atDN491741--2e-49At2g0522040S ribosomal protein S17 (RPS17B)O.I.H.G.S.X.
0.5078.60.98Ptp.2117.1.S1_s_atCV247380--3e-32At5g4793040S ribosomal protein S27 (RPS27D)O.I.H.G.S.X.
0.3357.50.97PtpAffx.18438.1.A1_s_atCV250284--4e-21At3g0852060S ribosomal protein L41 (RPL41D)O.I.H.G.S.X.
0.3357.50.97Ptp.2574.1.S1_atCV251969hypothetical protein-2e-55At5g2029040S ribosomal protein S8 (RPS8A)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.495.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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