Co-expression analysis

Gene ID	Ptp.2560.3.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g17770: ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) (HF=2e-27)
Module size	6 genes
NF	0.29
%ile	52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	Ptp.2560.3.S1_s_at	CK092469	hypothetical protein	-	2e-27	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.95	Ptp.2560.1.S1_s_at	CV270621	hypothetical protein	-	1e-65	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.7072.1.S1_s_at	CA926150	hypothetical protein	-	1e-62	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	Ptp.5776.1.S1_s_at	CV271742	hypothetical protein	-	4e-1	At4g04470	PMP22	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.95	PtpAffx.65560.1.S1_at	CV240577	-	-	9e-13	At5g19980	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.95	Ptp.5645.3.A1_a_at	CK087236	hypothetical protein	-	4e-7	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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