CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.2560.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g17770: ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) (HF=1e-65)

Module size 6 genes

NF 0.49

%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.95 Ptp.2560.1.S1_s_at CV270621 hypothetical protein - 1e-65 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.73 93.6 0.95 Ptp.5776.1.S1_s_at CV271742 hypothetical protein - 4e-1 At4g04470 PMP22 O.I. H.G. S.X.
0.73 93.6 0.95 Ptp.2560.3.S1_s_at CK092469 hypothetical protein - 2e-27 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.67 91.1 0.95 Ptp.7072.1.S1_s_at CA926150 hypothetical protein - 1e-62 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.61 87.0 0.93 PtpAffx.134162.1.A1_at CF232499 hypothetical protein - 4e-29 At5g24760 alcohol dehydrogenase, putative O.I. H.G. S.X.
0.10 16.3 0.95 PtpAffx.65560.1.S1_at CV240577 - - 9e-13 At5g19980 integral membrane family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.88	PtpAffx.139752.1.S1_at	CX171696	hypothetical protein	-	1e-13	At1g16860	merozoite surface protein-related	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.4009.2.S1_at	CN549592	hypothetical protein	-	6e-87	At1g32930	galactosyltransferase family protein	O.I.	H.G.	S.X.
0.40	67.0	0.94	Ptp.5776.1.S1_a_at	CV271742	hypothetical protein	-	4e-1	At4g04470	PMP22	O.I.	H.G.	S.X.
0.36	61.6	0.89	PtpAffx.82322.1.A1_at	CV251840	hypothetical protein	-	4e-13	At2g30400	OFP2 (OVATE FAMILY PROTEIN 2)	O.I.	H.G.	S.X.
0.33	57.5	0.90	Ptp.6420.1.S1_at	CV225962	hypothetical protein	-	8e-9	At2g43120	pirin, putative	O.I.	H.G.	S.X.
0.33	57.5	0.92	Ptp.4730.1.A1_s_at	CV267232	-	-	1e-10	At3g53260	PAL2	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.140097.1.A1_a_at	CV272774	arogenate/prephenate dehydratase	-	5e-13	At1g11790	ADT1 (arogenate dehydratase 1)	O.I.	H.G.	S.X.
0.32	55.2	0.93	Ptp.6462.1.S1_s_at	CF232785	3-phosphoshikimate 1-carboxyvinyltransferase	-	1e-63	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	O.I.	H.G.	S.X.
0.29	50.5	0.90	PtpAffx.833.1.A1_at	CV243171	hypothetical protein	-	2e-16	At4g34588	CPuORF2 (Conserved peptide upstream open reading frame 2)	O.I.	H.G.	S.X.
0.22	38.3	0.93	PtpAffx.9498.2.S1_at	DN501852	-	-	1e+0	At5g25020	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.8 94.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1 93.2 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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