Co-expression analysis

Gene ID Ptp.2560.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g17770: ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) (HF=1e-65)
Module size 6 genes
NF 0.49
%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.95Ptp.2560.1.S1_s_atCV270621hypothetical protein-1e-65At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.7393.60.95Ptp.5776.1.S1_s_atCV271742hypothetical protein-4e-1At4g04470PMP22O.I.H.G.S.X.
0.7393.60.95Ptp.2560.3.S1_s_atCK092469hypothetical protein-2e-27At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.6791.10.95Ptp.7072.1.S1_s_atCA926150hypothetical protein-1e-62At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.6187.00.93PtpAffx.134162.1.A1_atCF232499hypothetical protein-4e-29At5g24760alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.1016.30.95PtpAffx.65560.1.S1_atCV240577--9e-13At5g19980integral membrane family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.193.2GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.428.1.S1_at, orthologous to the query gene, Ptp.2560.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.1Zm.428.1.S1_atAt5g17770hypothetical protein LOC100191335-8e-16At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.5571.6Zm.17580.1.S1_atAt5g17770--2e+0At2g48070RPH1 (RESISTANCE TO PHYTOPHTHORA 1)O.I.H.G.S.X.
0.4759.9Zm.6455.1.A1_atAt5g17770--3e-17At3g63280ATNEK4 (NIMA-RELATED KINASE 4)O.I.H.G.S.X.
0.3538.9Zm.1712.1.A1_atAt5g17770TBC domain containing protein-8e-5At5g54780RAB GTPase activatorO.I.H.G.S.X.
0.2622.7Zm.11606.1.S1_atAt5g17770--8e-2At3g09922IPS1 (INDUCED BY PHOSPHATE STARVATION1)O.I.H.G.S.X.
0.2521.3Zm.4560.2.S1_atAt5g17770--2e-11At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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