Co-expression analysis

Gene ID	Ptp.2560.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g17770: ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) (HF=1e-65)
Module size	6 genes
NF	0.49
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.95	Ptp.2560.1.S1_s_at	CV270621	hypothetical protein	-	1e-65	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.95	Ptp.5776.1.S1_s_at	CV271742	hypothetical protein	-	4e-1	At4g04470	PMP22	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.95	Ptp.2560.3.S1_s_at	CK092469	hypothetical protein	-	2e-27	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.7072.1.S1_s_at	CA926150	hypothetical protein	-	1e-62	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.93	PtpAffx.134162.1.A1_at	CF232499	hypothetical protein	-	4e-29	At5g24760	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.95	PtpAffx.65560.1.S1_at	CV240577	-	-	9e-13	At5g19980	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6627.1.S1_at, orthologous to the query gene, Ptp.2560.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	Ta.6627.1.S1_at	At5g17770	-	-	2e-9	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.9306.3.S1_a_at	At5g17770	-	-	4e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.6566.2.S1_at	At5g17770	-	-	1e-18	At4g29040	RPT2a (regulatory particle AAA-ATPase 2a)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.9306.3.S1_x_at	At5g17770	-	-	4e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.27665.1.S1_s_at	At5g17770	1-acy1-glycerol-3-phosphate acyltransferase	-	4e-23	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.3530.1.S1_x_at	At5g17770	-	-	1e-1	At1g19130	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.3049.2.S1_a_at	At5g17770	-	-	2e-8	At2g04940	scramblase-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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