Co-expression analysis

Gene ID Ptp.2560.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g17770: ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) (HF=1e-65)
Module size 6 genes
NF 0.49
%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.95Ptp.2560.1.S1_s_atCV270621hypothetical protein-1e-65At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.7393.60.95Ptp.5776.1.S1_s_atCV271742hypothetical protein-4e-1At4g04470PMP22O.I.H.G.S.X.
0.7393.60.95Ptp.2560.3.S1_s_atCK092469hypothetical protein-2e-27At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.6791.10.95Ptp.7072.1.S1_s_atCA926150hypothetical protein-1e-62At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.6187.00.93PtpAffx.134162.1.A1_atCF232499hypothetical protein-4e-29At5g24760alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.1016.30.95PtpAffx.65560.1.S1_atCV240577--9e-13At5g19980integral membrane family proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.193.2GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g17770, orthologous to the query gene, Ptp.2560.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g17770831645ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.O.I.H.G.S.X.
0.5773.8At1g65930842905isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeF:isocitrate dehydrogenase (NADP+) activity, copper ion binding;P:response to cadmium ion, response to salt stress, metabolic process;C:apoplast, plasma membrane;OBMPFAO.I.H.G.S.X.
0.4862.5At2g24765817014ARF3 (ADP-RIBOSYLATION FACTOR 3)GTPase required for Golgi targeting of GRIP domain proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent mannerO.I.H.G.S.X.
0.4862.5At1g30630839943coatomer protein epsilon subunit family protein / COPE family proteinF:protein transporter activity, protein binding, structural molecule activity, binding;P:retrograde vesicle-mediated transport, Golgi to ER;C:plasma membrane;MPFOBAO.I.H.G.S.X.
0.4457.2At2g29960817546CYP5 (CYCLOPHILIN 5)encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.O.I.H.G.S.X.
0.4457.2At2g36530818226LOS2Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.H.G.S.X.
0.4253.9At5g08080830702SYP132 (SYNTAXIN OF PLANTS 132)member of SYP13 Gene FamilyO.I.H.G.S.X.
0.4253.9At3g15610820803transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.H.G.S.X.
0.4152.4At5g04420830321kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOPFBVAO.I.H.G.S.X.
0.3846.7At2g33040817866ATP synthase gamma chain, mitochondrial (ATPC)F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPAO.I.H.G.S.X.
0.3745.0At2g21160816651translocon-associated protein alpha (TRAP alpha) family proteinF:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole;MPFOO.I.H.G.S.X.
0.3745.0At1g10670837610ACLA-1One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.O.I.H.G.S.X.
0.3745.0At2g47320819345peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:unknown;BOMFPAO.I.H.G.S.X.
0.3643.6At3g03100821104NADH:ubiquinone oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:unknown;C:mitochondrion, respiratory chain complex I;OBMFPO.I.H.G.S.X.
0.3643.6At5g50850835157MAB1 (MACCI-BOU)F:pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity;P:defense response to bacterium;C:mitochondrion, nucleolus, plasma membrane;BOMPFAO.I.H.G.S.X.
0.3541.6At1g20575838646dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeF:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPVO.I.H.G.S.X.
0.3541.6At5g03300831882ADK2 (ADENOSINE KINASE 2)Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion.O.I.H.G.S.X.
0.3541.6At5g08670830768ATP binding / hydrogen ion transporting ATP synthase, rotational mechanismEncodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.O.I.H.G.S.X.
0.3439.8At5g54750835565transport protein particle (TRAPP) component Bet3, putativeF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.3338.1At3g52300824395ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)F:hydrogen ion transmembrane transporter activity;P:response to salt stress;C:in 8 components;MPFOO.I.H.G.S.X.
0.3338.1At4g29480829069mitochondrial ATP synthase g subunit family proteinF:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrion;POO.I.H.G.S.X.
0.3235.7At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.
0.3133.8At1g04750839419VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)vesicle-associated membrane protein 7B (At VAMP7B) mRNA,O.I.H.G.S.X.
0.3032.1At1g16700838239NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putativeF:NADH dehydrogenase (ubiquinone) activity, metal ion binding;P:unknown;C:mitochondrion, respiratory chain complex I;BOAPMFO.I.H.G.S.X.
0.3032.1At2g47470819360UNE5 (UNFERTILIZED EMBRYO SAC 5)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.O.I.H.G.S.X.
0.2830.3At4g13940827028MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.O.I.H.G.S.X.
0.2830.3At2g32980817860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.2830.3At5g53560835438CB5-E (CYTOCHROME B5 ISOFORM E)Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.O.I.H.G.S.X.
0.2830.3At5g47570834807unknown proteinF:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;POO.I.H.G.S.X.
0.2624.4At1g49140841337NADH-ubiquinone oxidoreductase-relatedF:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPMO.I.H.G.S.X.
0.2522.6At3g02090821084mitochondrial processing peptidase beta subunit, putativeF:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAVO.I.H.G.S.X.
0.2522.6At5g52840835361NADH-ubiquinone oxidoreductase-relatedF:oxidoreductase activity, acting on NADH or NADPH;P:photorespiration;C:mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane;MFPOO.I.H.G.S.X.
0.2420.7At3g08580820005AAC1 (ADP/ATP CARRIER 1)mitochondrial ADP/ATP carrierO.I.H.G.S.X.
0.2420.7At2g20360816555binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:response to salt stress;C:mitochondrion, respiratory chain complex I, membrane;BOMFPAO.I.H.G.S.X.
0.2319.3At3g22110821774PAC1Encodes the alpha-3 subunit of 20s proteasome.O.I.H.G.S.X.
0.2217.5At5g61840836306GUT1F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBFO.I.H.G.S.X.
0.2217.5At1g05500837052NTMC2T2.1F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFOO.I.H.G.S.X.
0.2115.8At5g57020835805NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase.O.I.H.G.S.X.
0.2014.4At3g17430821007phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.1912.7At2g25280817066-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFPO.I.H.G.S.X.
0.1710.2At3g05420819707ACBP4 (ACYL-COA BINDING PROTEIN 4)Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.O.I.H.G.S.X.

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