Co-expression analysis

Gene ID Ptp.2558.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g78900: VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) (HF=0)
Module size 6 genes
NF 0.53
%ile 84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.96Ptp.2558.1.S1_atCK096344hypothetical protein-0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.5784.20.96Ptp.7787.1.S1_s_atDN499212--4e+0At2g05642-O.I.H.G.S.X.
0.4673.70.96PtpAffx.28339.1.S1_atCV264979hypothetical protein-1e-29At4g38790ER lumen protein retaining receptor family proteinO.I.H.G.S.X.
0.4369.70.96PtpAffx.43623.2.A1_a_atCV227115hypothetical protein-7e-5At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.4067.00.96PtpAffx.135882.1.A1_atCV281275hypothetical protein-1e-7At1g78420protein binding / zinc ion bindingO.I.H.G.S.X.
0.3357.50.96Ptp.2672.1.A1_atCV254014hypothetical protein-1e-67At1g51590mannosyl-oligosaccharide 1,2-alpha-mannosidase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.684.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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