Co-expression analysis

Gene ID Ptp.2481.1.A1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g02570: ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) (HF=2e-28)
Module size 9 genes
NF 0.34
%ile 59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.95Ptp.2481.1.A1_s_atCV247386hypothetical protein-2e-28At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.5380.50.96PtpAffx.85976.1.A1_atCV276904hypothetical protein-6e-17At1g58230WD-40 repeat family protein / beige-relatedO.I.H.G.S.X.
0.4875.40.96PtpAffx.249.231.S1_atCV256965--2e-73At2g24360serine/threonine/tyrosine kinase, putativeO.I.H.G.S.X.
0.4471.90.96PtpAffx.74063.1.A1_s_atCV262783hypothetical protein-1e+0At4g00100ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)O.I.H.G.S.X.
0.4268.60.96PtpAffx.9380.1.S1_atCV236036hypothetical protein-2e-66At4g27690VPS26B (VACUOLAR PROTEIN SORTING 26B)O.I.H.G.S.X.
0.3255.20.96Ptp.4479.1.S1_atBU825072hypothetical protein-3e-14At3g05090transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2747.10.96Ptp.261.1.S1_s_atCK093526hypothetical protein-5e-18At5g55500XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)O.I.H.G.S.X.
0.2747.10.96PtpAffx.215439.1.S1_atpmrna29631hypothetical protein-1e-68At5g38640eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.1830.80.95PtpAffx.249.240.S1_s_atCV266560hypothetical protein-9e-35At3g45240GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.3GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.796.3GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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