Co-expression analysis

Gene ID	Ptp.2475.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g69830: AMY3 (ALPHA-AMYLASE-LIKE 3) (HF=4e-111)
Module size	6 genes
NF	0.21
%ile	39.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.84	Ptp.2475.1.S1_at	CV245364	-	-	4e-111	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.82	PtpAffx.11916.2.S1_a_at	CK107522	MIKC mads-box transcription factor	-	1e-5	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.83	PtpAffx.103751.1.A1_at	CK094169	hypothetical protein	-	4e+0	At5g30495	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.84	PtpAffx.211313.1.S1_at	pmrna22182	hypothetical protein	-	7e-4	At1g52855	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.86	PtpAffx.221180.1.S1_at	pmrna37857	hypothetical protein	-	2e-66	At5g09890	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.86	PtpAffx.206679.1.S1_at	pmrna13249	hypothetical protein	-	2e-7	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0	96.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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