Co-expression analysis

Gene ID	Ptp.2463.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=3e-2)
Module size	6 genes
NF	0.57
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.93	Ptp.2463.1.S1_s_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.147241.1.A1_s_at	CV244318	hypothetical protein	-	2e+0	At5g51650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.2463.1.S1_a_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.93	PtpAffx.42700.1.A1_at	BP934666	hypothetical protein	-	5e+0	At4g03050	AOP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.34437.2.S1_at	AJ779507	hypothetical protein	-	1e+0	At1g62421	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.91	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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