CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.2463.1.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=3e-2)

Module size 6 genes

NF 0.60

%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.93 Ptp.2463.1.S1_a_at CV257616 hypothetical protein - 3e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.67 91.1 0.92 Ptp.2463.1.S1_s_at CV257616 hypothetical protein - 3e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.55 82.2 0.94 PtpAffx.147241.1.A1_s_at CV244318 hypothetical protein - 2e+0 At5g51650 unknown protein O.I. H.G. S.X.
0.46 73.7 0.93 Ptp.2344.1.A1_x_at CV243674 hypothetical protein - 2e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) O.I. H.G. S.X.
0.46 73.7 0.93 Ptp.2344.1.A1_at CV243674 hypothetical protein - 2e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) O.I. H.G. S.X.
0.44 71.9 0.92 PtpAffx.42700.1.A1_at BP934666 hypothetical protein - 5e+0 At4g03050 AOP3 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.95	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.
0.46	73.7	0.89	PtpAffx.151957.1.A1_at	BP930316	-	-	7e-2	At1g02260	transmembrane protein, putative	O.I.	H.G.	S.X.
0.46	73.7	0.90	PtpAffx.224200.1.S1_at	pmrna42516	cc-nbs-lrr resistance protein	-	1e-1	At3g14470	disease resistance protein (NBS-LRR class), putative	O.I.	H.G.	S.X.
0.40	67.0	0.89	PtpAffx.4624.1.S1_at	CV254219	AP2/ERF domain-containing transcription factor	-	7e-19	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.
0.40	67.0	0.92	PtpAffx.217948.1.S1_at	pmrna33419	pleiotropic drug resistance, ABC transporter family protein	-	9e-26	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.34437.2.S1_at	AJ779507	hypothetical protein	-	1e+0	At1g62421	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.35633.1.A1_at	CV274877	nbs-lrr resistance protein	-	1e-1	At5g35610	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.
0.31	53.7	0.85	PtpAffx.224371.1.S1_at	pmrna42842	hypothetical protein	-	8e-8	At1g11330	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.
0.31	53.7	0.88	PtpAffx.207289.1.S1_at	pmrna14461	hypothetical protein	-	1e+0	At4g33565	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.31	53.7	0.92	PtpAffx.93473.1.A1_at	BP936789	hypothetical protein	-	2e-30	At4g24160	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.27	47.1	0.87	PtpAffx.17234.1.S1_at	CV261564	-	-	2e+0	At4g25310	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.27	47.1	0.90	PtpAffx.212510.1.S1_s_at	pmrna24499	hypothetical protein	-	3e+0	At5g18200	UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 94.7 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5 94.3 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4 94.0 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4 90.4 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8 86.4 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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